BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0573600 Os07g0573600|AK073925
         (131 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0573600  REX1 DNA Repair family protein                      221   1e-58
Os05g0198700  REX1 DNA Repair family protein                      120   3e-28
Os05g0108500  REX1 DNA Repair family protein                      101   1e-22

>Os07g0573600 REX1 DNA Repair family protein
          Length = 131

 Score =  221 bits (563), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 28  VCSYRSVQRRTGAREDNSTGRRQRWHSVLQRAENMVNAIKGLFISCDVPMAQFIVNLNAS 87
           VCSYRSVQRRTGAREDNSTGRRQRWHSVLQRAENMVNAIKGLFISCDVPMAQFIVNLNAS
Sbjct: 28  VCSYRSVQRRTGAREDNSTGRRQRWHSVLQRAENMVNAIKGLFISCDVPMAQFIVNLNAS 87

Query: 88  MPASDKFILHMLDPTHMFVQPHVAEMIRSKISEFRDQNSYEKPT 131
           MPASDKFILHMLDPTHMFVQPHVAEMIRSKISEFRDQNSYEKPT
Sbjct: 88  MPASDKFILHMLDPTHMFVQPHVAEMIRSKISEFRDQNSYEKPT 131



>Os05g0198700 REX1 DNA Repair family protein
          Length = 121

 Score =  120 bits (300), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 55/60 (91%), Positives = 58/60 (96%)

Query: 58  RAENMVNAIKGLFISCDVPMAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVAEMIRSK 117
           ++ NMVNAIKGLFISCDVPMAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVAEMIR +
Sbjct: 53  KSRNMVNAIKGLFISCDVPMAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVAEMIREE 112



>Os05g0108500 REX1 DNA Repair family protein
          Length = 65

 Score =  101 bits (252), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/60 (81%), Positives = 53/60 (88%), Gaps = 1/60 (1%)

Query: 73  CDVP-MAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVAEMIRSKISEFRDQNSYEKPT 131
           C  P M Q+  + NASMPASDKFILHMLDPTHMFVQPHVA+MIRSKISEFRDQNSYEKP+
Sbjct: 6   CSSPVMCQWHSSSNASMPASDKFILHMLDPTHMFVQPHVADMIRSKISEFRDQNSYEKPS 65



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.131    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,193,004
Number of extensions: 103292
Number of successful extensions: 371
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 3
Length of query: 131
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 42
Effective length of database: 12,388,755
Effective search space: 520327710
Effective search space used: 520327710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 150 (62.4 bits)