Os05g0108500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : REX1 DNA Repair family protein.
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Os05g0108500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : REX1 DNA Repair family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.45 | 0.306 | 10.8 | -2.59 | 0.965 | -3.56 | 0.825 | -5.78 | -0.224 | 3.67 | 20.01 | 5597 | -- | -- |
| 46.18 | 0.316 | 10.9 | -2.5 | 0.991 | -1.06 | 0.825 | -- | -0.282 | 3.77 | 25.16 | 4586 | -- | -- |
| 44.21 | 0.31 | 10.8 | -2.63 | 0.992 | -3.97 | -- | -6.64 | -0.243 | 3.71 | 19.81 | 6035 | -- | -- |
| 47.72 | 0.322 | 10.9 | -2.46 | 0.962 | -1.06 | -- | -- | -0.281 | 3.71 | 26.42 | 3180 | -- | -- |
| 96.28 | 0.457 | 10.8 | -2.6 | -- | -4.08 | -- | -6.75 | -0.212 | -- | 19.8 | 5484 | -- | -- |
| 64.3 | 0.376 | 10.9 | -1.99 | 0.999 | -- | 0.807 | -- | -0.0206 | 3.65 | -- | -- | -- | -- |
| 66.27 | 0.381 | 10.9 | -2 | 1 | -- | -- | -- | -0.0253 | 3.68 | -- | -- | -- | -- |
| 94.5 | 0.453 | 10.9 | -2.42 | -- | -1.16 | -- | -- | -0.238 | -- | 53.38 | 2628 | -- | -- |
| 168.73 | 0.605 | 10.8 | -- | 1.02 | 0.449 | -- | -- | 0.187 | 3.8 | 19.55 | 919 | -- | -- |
| 122.19 | 0.517 | 10.9 | -1.96 | -- | -- | -- | -- | 0.0015 | -- | -- | -- | -- | -- |
| 171.66 | 0.613 | 10.8 | -- | 0.965 | -- | -- | -- | 0.197 | 3.7 | -- | -- | -- | -- |
| 175.26 | 0.617 | 10.8 | -- | -- | 1.14 | -- | -- | 0.505 | -- | 22.8 | 47520 | -- | -- |
| 223.3 | 0.697 | 10.8 | -- | -- | -- | -- | -- | 0.219 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.01 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 3 | 42.18 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 60 | 42.79 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 110 | 43.02 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 128 | 43.10 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 232 | 43.45 | temperature | 25.0 | 4320 | < th | dose dependent | sin | 13 | NA |
| 247 | 43.49 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 282 | 43.63 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 283 | 43.63 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 286 | 43.64 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 369 | 43.89 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 435 | 44.05 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 475 | 44.14 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 533 | 44.28 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 546 | 44.30 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 13 | 11 |
| 552 | 44.31 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 553 | 44.31 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 564 | 44.33 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 13 | 8 |
| 569 | 44.34 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 13 | 11 |
| 570 | 44.34 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 11 | 11 |
| 579 | 44.36 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 16 | 7 |
| 590 | 44.37 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 636 | 44.42 | temperature | 10.0 | 4320 | > th | dose dependent | sin | 12 | NA |
| 695 | 44.49 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 13 | 19 |
| 720 | 44.53 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 752 | 44.56 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 13 | 1 |
| 778 | 44.61 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 784 | 44.62 | atmosphere | 1015.0 | 14400 | < th | dose independent | sin | 18 | NA |
| 790 | 44.63 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 824 | 44.68 | atmosphere | 1015.0 | 14400 | > th | dose independent | sin | 18 | NA |
| 856 | 44.71 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 857 | 44.71 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 21 | 3 |