BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0108500 Os05g0108500|AK062946
         (65 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G12400.1  | chr1:4222296-4222603 FORWARD LENGTH=72              81   1e-16
AT1G62886.1  | chr1:23294413-23294710 FORWARD LENGTH=73            59   6e-10

>AT1G12400.1 | chr1:4222296-4222603 FORWARD LENGTH=72
          Length = 71

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 46/60 (76%), Gaps = 1/60 (1%)

Query: 6  CSSPVMCQWHSSSNASMPASDKFILHMLDPTHMFVQPHVADMIRSKISEFRDQNSYEKPS 65
          C  P M Q+  + N SMP S KFI+H+LD TH+FVQPHV  MIRS IS+FRDQNSYEKP+
Sbjct: 12 CDIP-MTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDFRDQNSYEKPT 70



>AT1G62886.1 | chr1:23294413-23294710 FORWARD LENGTH=73
          Length = 72

 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 3/62 (4%)

Query: 6  CSSPVMCQWHSSSNASMPASDKFILHML--DPTHMFVQPHVADMIRSKISEFRDQNSYEK 63
          C  P M Q+ +  N S+PAS KFI+ +L  D T MFV+P+  +MIR  + +FRD+NSY K
Sbjct: 12 CDVP-MAQFIAHLNNSLPASQKFIIQVLKLDTTSMFVKPYAEEMIRDAVIKFRDENSYAK 70

Query: 64 PS 65
           +
Sbjct: 71 AN 72



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.125    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,472,091
Number of extensions: 45177
Number of successful extensions: 114
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 2
Length of query: 65
Length of database: 11,106,569
Length adjustment: 38
Effective length of query: 27
Effective length of database: 10,064,761
Effective search space: 271748547
Effective search space used: 271748547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)