BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0108500 Os05g0108500|AK062946
         (65 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0108500  REX1 DNA Repair family protein                      135   6e-33
Os07g0573600  REX1 DNA Repair family protein                      101   1e-22
Os05g0198700  REX1 DNA Repair family protein                       70   2e-13

>Os05g0108500 REX1 DNA Repair family protein
          Length = 65

 Score =  135 bits (340), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 65/65 (100%), Positives = 65/65 (100%)

Query: 1  MQSRDCSSPVMCQWHSSSNASMPASDKFILHMLDPTHMFVQPHVADMIRSKISEFRDQNS 60
          MQSRDCSSPVMCQWHSSSNASMPASDKFILHMLDPTHMFVQPHVADMIRSKISEFRDQNS
Sbjct: 1  MQSRDCSSPVMCQWHSSSNASMPASDKFILHMLDPTHMFVQPHVADMIRSKISEFRDQNS 60

Query: 61 YEKPS 65
          YEKPS
Sbjct: 61 YEKPS 65



>Os07g0573600 REX1 DNA Repair family protein
          Length = 131

 Score =  101 bits (251), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/60 (81%), Positives = 53/60 (88%), Gaps = 1/60 (1%)

Query: 6   CSSPVMCQWHSSSNASMPASDKFILHMLDPTHMFVQPHVADMIRSKISEFRDQNSYEKPS 65
           C  P M Q+  + NASMPASDKFILHMLDPTHMFVQPHVA+MIRSKISEFRDQNSYEKP+
Sbjct: 73  CDVP-MAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVAEMIRSKISEFRDQNSYEKPT 131



>Os05g0198700 REX1 DNA Repair family protein
          Length = 121

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/46 (73%), Positives = 38/46 (82%), Gaps = 1/46 (2%)

Query: 6   CSSPVMCQWHSSSNASMPASDKFILHMLDPTHMFVQPHVADMIRSK 51
           C  P M Q+  + NASMPASDKFILHMLDPTHMFVQPHVA+MIR +
Sbjct: 68  CDVP-MAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVAEMIREE 112



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.125    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,245,668
Number of extensions: 67692
Number of successful extensions: 109
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 3
Length of query: 65
Length of database: 17,035,801
Length adjustment: 37
Effective length of query: 28
Effective length of database: 15,103,883
Effective search space: 422908724
Effective search space used: 422908724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)