Os05g0198700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : REX1 DNA Repair family protein.
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Os05g0198700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : REX1 DNA Repair family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.99 | 0.262 | 9.25 | -1.09 | 0.0969 | 0.988 | 0.757 | -1 | -0.369 | 14.5 | 9.906 | 917 | -- | -- |
| 31.71 | 0.262 | 9.23 | -0.906 | 0.0934 | 0.987 | 0.845 | -- | -0.319 | 13.8 | 10.92 | 885 | -- | -- |
| 32.85 | 0.267 | 9.25 | -1.15 | 0.104 | 1.01 | -- | -1.38 | -0.378 | 13.1 | 6.513 | 897 | -- | -- |
| 34.16 | 0.272 | 9.22 | -0.874 | 0.122 | 1.06 | -- | -- | -0.317 | 8.49 | 14.2 | 704 | -- | -- |
| 33.37 | 0.269 | 9.25 | -1.12 | -- | 0.964 | -- | -1.34 | -0.375 | -- | 7.947 | 847 | -- | -- |
| 46.43 | 0.319 | 9.19 | -0.637 | 0.00852 | -- | -0.876 | -- | -0.164 | 2.48 | -- | -- | -- | -- |
| 48.23 | 0.325 | 9.19 | -0.613 | 0.132 | -- | -- | -- | -0.157 | 20.3 | -- | -- | -- | -- |
| 34.78 | 0.275 | 9.22 | -0.859 | -- | 0.957 | -- | -- | -0.305 | -- | 13.98 | 756 | -- | -- |
| 51.25 | 0.333 | 9.2 | -- | 0.182 | 0.614 | -- | -- | -0.183 | 3.29 | 20.88 | 339 | -- | -- |
| 49.19 | 0.328 | 9.19 | -0.614 | -- | -- | -- | -- | -0.158 | -- | -- | -- | -- | -- |
| 58.14 | 0.357 | 9.18 | -- | 0.135 | -- | -- | -- | -0.0888 | 20 | -- | -- | -- | -- |
| 51.88 | 0.335 | 9.19 | -- | -- | 0.52 | -- | -- | -0.164 | -- | 20.15 | 592 | -- | -- |
| 59.13 | 0.359 | 9.17 | -- | -- | -- | -- | -- | -0.0903 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 3 | 30.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 4 | 30.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 6 | 30.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 10 | 30.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 18 | 30.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 33 | 31.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 54 | 31.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 72 | 31.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 73 | 31.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 20 |
| 92 | 31.46 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 96 | 31.49 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 139 | 31.71 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 151 | 31.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 7 |
| 171 | 31.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 317 | 32.05 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 333 | 32.08 | temperature | 10 | 1440 | > th | dose dependent | sin | 18 | NA |
| 386 | 32.16 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 398 | 32.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 427 | 32.22 | temperature | 10 | 720 | > th | dose dependent | sin | 3 | NA |
| 457 | 32.25 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 458 | 32.26 | temperature | 30 | 1440 | < th | dose dependent | sin | 18 | NA |
| 487 | 32.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 571 | 32.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 23 |