BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0198700 Os05g0198700|Os05g0198700
         (121 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G12400.1  | chr1:4222296-4222603 FORWARD LENGTH=72              93   3e-20
AT1G62886.1  | chr1:23294413-23294710 FORWARD LENGTH=73            82   8e-17

>AT1G12400.1 | chr1:4222296-4222603 FORWARD LENGTH=72
          Length = 71

 Score = 93.2 bits (230), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 40/54 (74%), Positives = 48/54 (88%)

Query: 57  MVNAIKGLFISCDVPMAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVAEMIR 110
           MVNAIKG+F+SCD+PM QFIVN+N SMP S KFI+H+LD TH+FVQPHV +MIR
Sbjct: 1   MVNAIKGVFVSCDIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIR 54



>AT1G62886.1 | chr1:23294413-23294710 FORWARD LENGTH=73
          Length = 72

 Score = 81.6 bits (200), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 2/60 (3%)

Query: 57  MVNAIKGLFISCDVPMAQFIVNLNASMPASDKFILHM--LDPTHMFVQPHVAEMIREEAV 114
           MVN+IKG+FISCDVPMAQFI +LN S+PAS KFI+ +  LD T MFV+P+  EMIR+  +
Sbjct: 1   MVNSIKGVFISCDVPMAQFIAHLNNSLPASQKFIIQVLKLDTTSMFVKPYAEEMIRDAVI 60



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,325,501
Number of extensions: 74593
Number of successful extensions: 162
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 2
Length of query: 121
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 35
Effective length of database: 8,748,793
Effective search space: 306207755
Effective search space used: 306207755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 105 (45.1 bits)