Os07g0573600 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0573600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : REX1 DNA Repair family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	10.3	(0.0224)	R²	:	0.463
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	1.15	(0.0583)	R²_dC	:	0.463	R²_C	:	0.46
β₃	:	--	(--)	R²_dE	:	--	R²_E	:	--
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.0657	(0.0472)	R²_dN8	:	0.00295	R²_N8	:	-0.00041
σ	:	0.423
deviance	:	81.91
__

_____

C
peak time of C	:	16.8
E
wheather	:	--
threshold	:	--
memory length	:	--
response mode	:	--
dose dependency	:	--
G
type of G	:	--
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
61.15	0.367	9.37	-1.47	1.15	-26.5	0.783	-55.2	0.0712	16.8	14.97	4957	--	--
66.47	0.383	10.3	0.731	1.16	-0.0462	0.675	--	0.144	16.8	14.7	97	--	--
62.21	0.367	9.39	-1.47	1.16	-26.5	--	-55.1	0.0676	16.8	14.93	5436	--	--
64.24	0.373	10.3	0.623	1.07	-0.247	--	--	0.122	16.9	28.3	33	--	--
132.6	0.536	9.37	-1.54	--	-26.5	--	-55.1	0.032	--	14.9	6121	--	--
66.48	0.382	10.3	0.732	1.16	--	0.673	--	0.144	16.8	--	--	--	--
67.66	0.385	10.3	0.735	1.17	--	--	--	0.148	16.8	--	--	--	--
94.1	0.452	10.3	0.705	--	-0.725	--	--	0.00166	--	26.6	256	--	--
75.1	0.404	10.3	--	0.95	-0.361	--	--	0.0346	17.2	28.3	48	--	--
139.67	0.552	10.2	0.692	--	--	--	--	0.117	--	--	--	--	--
81.91	0.423	10.3	--	1.15	--	--	--	0.0657	16.8	--	--	--	--
98.25	0.462	10.3	--	--	-0.841	--	--	-0.157	--	26.38	265	--	--
152.29	0.576	10.3	--	--	--	--	--	0.0406	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	55.09	temperature	10.0	10	> th	dose dependent	rect.	9	18
7	55.97	temperature	10.0	43200	> th	dose independent	rect.	10	6
10	56.29	temperature	10.0	43200	> th	dose independent	rect.	10	8
13	56.42	atmosphere	1000.0	10	> th	dose dependent	rect.	3	6
18	56.68	precipitation	0.1	10	< th	dose independent	rect.	9	18
19	56.68	precipitation	0.1	10	< th	dose dependent	rect.	9	18
24	56.73	precipitation	0.1	10	< th	dose independent	rect.	3	6
25	56.73	precipitation	0.1	10	< th	dose dependent	rect.	3	6
26	56.74	wind	5.0	30	< th	dose independent	rect.	3	6
48	56.92	temperature	10.0	10	> th	dose independent	rect.	3	6
50	56.92	temperature	30.0	10	< th	dose independent	rect.	3	6
51	56.92	humidity	50.0	10	> th	dose independent	rect.	3	6
53	56.92	atmosphere	995.0	10	> th	dose independent	rect.	3	6
54	56.92	atmosphere	1015.0	10	< th	dose independent	rect.	3	6
56	56.92	temperature	10.0	10	> th	dose independent	rect.	9	18
57	56.93	wind	9.0	10	< th	dose independent	rect.	9	18
72	57.01	temperature	10.0	1440	> th	dose independent	rect.	3	7
79	57.01	atmosphere	995.0	1440	> th	dose independent	rect.	3	7
82	57.01	temperature	10.0	1440	> th	dose independent	rect.	10	17
111	57.15	temperature	10.0	10	> th	dose dependent	rect.	9	15
114	57.19	wind	9.0	10	< th	dose dependent	rect.	3	6
122	57.26	temperature	30.0	90	< th	dose dependent	rect.	3	17
132	57.35	atmosphere	995.0	10	> th	dose independent	rect.	9	18
135	57.40	radiation	40.0	30	< th	dose independent	rect.	3	6
159	57.53	atmosphere	1015.0	1440	< th	dose independent	rect.	4	6
228	57.85	temperature	30.0	10	< th	dose dependent	rect.	4	16
233	57.91	radiation	1.0	30	> th	dose independent	rect.	9	9
239	57.95	temperature	10.0	10	> th	dose dependent	rect.	3	6
245	58.02	humidity	50.0	30	> th	dose independent	rect.	9	18
247	58.03	wind	5.0	270	< th	dose independent	rect.	3	2
251	58.07	temperature	10.0	270	> th	dose dependent	rect.	6	8
272	58.21	precipitation	0.1	270	< th	dose independent	rect.	3	2
274	58.21	wind	1.0	270	> th	dose independent	rect.	11	9
275	58.21	precipitation	0.1	270	< th	dose independent	rect.	5	22
276	58.21	precipitation	0.1	270	< th	dose dependent	rect.	3	2
278	58.21	precipitation	0.1	270	< th	dose dependent	rect.	5	22
280	58.22	temperature	10.0	10	> th	dose dependent	rect.	9	6
283	58.24	atmosphere	1005.0	10	> th	dose independent	rect.	3	6
292	58.28	temperature	30.0	270	< th	dose dependent	rect.	3	2
297	58.31	radiation	1.0	270	< th	dose dependent	rect.	3	2
307	58.35	temperature	10.0	270	> th	dose dependent	rect.	9	1
308	58.36	humidity	50.0	1440	> th	dose independent	rect.	3	7
313	58.39	wind	1.0	270	> th	dose independent	rect.	1	5
318	58.40	temperature	10.0	270	> th	dose independent	rect.	3	2
320	58.40	temperature	30.0	270	< th	dose independent	rect.	3	2
321	58.40	humidity	50.0	270	> th	dose independent	rect.	3	2
324	58.40	atmosphere	995.0	270	> th	dose independent	rect.	3	2
325	58.40	atmosphere	1010.0	270	< th	dose independent	rect.	3	2
327	58.40	radiation	20.0	270	< th	dose independent	rect.	3	2
330	58.40	temperature	10.0	270	> th	dose independent	rect.	5	22
346	58.42	wind	3.0	4320	< th	dose independent	rect.	8	1
347	58.42	wind	1.0	270	> th	dose independent	rect.	2	3
349	58.42	radiation	30.0	270	< th	dose dependent	rect.	3	2
363	58.48	radiation	1.0	270	< th	dose independent	rect.	3	2
370	58.49	wind	9.0	270	< th	dose independent	rect.	5	22
389	58.53	wind	3.0	4320	> th	dose independent	rect.	8	1
434	58.57	temperature	10.0	90	> th	dose dependent	rect.	8	9
442	58.60	wind	1.0	270	> th	dose independent	rect.	3	1
451	58.63	atmosphere	1000.0	90	> th	dose independent	rect.	20	7
507	58.69	wind	1.0	270	> th	dose independent	rect.	24	7
523	58.72	temperature	15.0	10	> th	dose dependent	rect.	9	9
526	58.73	temperature	10.0	270	> th	dose independent	rect.	11	9
527	58.73	atmosphere	1015.0	270	< th	dose independent	rect.	11	9
528	58.73	temperature	10.0	270	> th	dose independent	rect.	20	15
529	58.73	atmosphere	995.0	270	> th	dose independent	rect.	20	15
547	58.75	radiation	40.0	270	< th	dose dependent	rect.	1	6
561	58.78	humidity	50.0	270	> th	dose independent	rect.	20	15
562	58.78	temperature	15.0	270	> th	dose independent	rect.	2	17
565	58.79	atmosphere	1000.0	270	> th	dose independent	rect.	20	5
568	58.79	wind	9.0	270	< th	dose independent	rect.	20	15
570	58.80	radiation	40.0	4320	< th	dose independent	rect.	16	5
582	58.83	radiation	40.0	90	< th	dose dependent	rect.	13	20
604	58.86	wind	1.0	30	> th	dose independent	rect.	2	7
605	58.86	radiation	30.0	270	< th	dose independent	rect.	13	17
614	58.87	radiation	40.0	90	< th	dose dependent	rect.	3	6
630	58.89	wind	1.0	270	> th	dose independent	rect.	1	18
632	58.89	atmosphere	1015.0	10	< th	dose independent	rect.	9	18
634	58.89	wind	9.0	270	< th	dose dependent	rect.	3	2
635	58.89	temperature	30.0	90	< th	dose dependent	rect.	3	5
662	58.93	wind	1.0	30	> th	dose independent	rect.	9	18
712	58.97	wind	9.0	270	< th	dose dependent	rect.	6	8
713	58.98	precipitation	0.1	270	< th	dose independent	rect.	6	9
714	58.98	humidity	50.0	270	> th	dose dependent	rect.	3	2
717	58.98	precipitation	0.1	270	< th	dose dependent	rect.	6	9
721	58.99	wind	9.0	270	< th	dose independent	rect.	6	9
722	58.99	wind	9.0	270	< th	dose independent	rect.	11	9
723	58.99	precipitation	0.1	270	< th	dose independent	rect.	20	15
728	58.99	precipitation	0.1	270	< th	dose dependent	rect.	20	15
735	59.01	temperature	10.0	270	> th	dose independent	rect.	19	7
736	59.01	temperature	30.0	270	< th	dose independent	rect.	19	7
737	59.01	humidity	50.0	270	> th	dose independent	rect.	19	7
739	59.01	radiation	1.0	270	< th	dose independent	rect.	19	7
746	59.01	atmosphere	1015.0	270	< th	dose independent	rect.	2	17
747	59.01	wind	5.0	4320	< th	dose dependent	rect.	8	1
752	59.01	radiation	1.0	270	< th	dose dependent	rect.	19	7
766	59.03	wind	9.0	270	< th	dose independent	rect.	19	7
794	59.09	wind	3.0	4320	> th	dose independent	rect.	6	3
795	59.09	wind	3.0	4320	< th	dose independent	rect.	6	3
799	59.09	temperature	15.0	270	> th	dose dependent	rect.	8	3
811	59.10	precipitation	0.1	270	< th	dose independent	rect.	19	7
815	59.10	precipitation	0.1	270	< th	dose dependent	rect.	19	7
825	59.13	temperature	10.0	270	> th	dose independent	rect.	6	9
826	59.13	atmosphere	1015.0	270	< th	dose independent	rect.	6	9
827	59.13	temperature	10.0	270	> th	dose independent	rect.	15	15
858	59.15	wind	9.0	270	< th	dose independent	rect.	15	15
869	59.16	radiation	40.0	270	< th	dose dependent	rect.	15	15
870	59.16	radiation	40.0	270	< th	dose dependent	rect.	13	17
891	59.18	radiation	1.0	270	< th	dose dependent	rect.	2	16
905	59.20	atmosphere	995.0	270	> th	dose independent	rect.	6	9
906	59.20	wind	9.0	270	< th	dose independent	rect.	2	17
919	59.21	atmosphere	995.0	30	> th	dose dependent	rect.	9	18
945	59.23	radiation	1.0	270	< th	dose independent	rect.	2	16
948	59.23	atmosphere	995.0	270	> th	dose independent	rect.	6	19
959	59.23	radiation	10.0	14400	< th	dose dependent	rect.	21	7
963	59.24	atmosphere	1000.0	270	> th	dose independent	rect.	21	3
977	59.26	wind	9.0	1440	< th	dose independent	rect.	3	6
988	59.26	precipitation	0.1	270	< th	dose independent	rect.	2	17
998	59.26	precipitation	0.1	270	< th	dose dependent	rect.	2	17