BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0568000 Os07g0568000|AK072783
(773 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0568000 Apolipophorin III-like domain containing protein 1373 0.0
Os07g0200000 Conserved hypothetical protein 345 8e-95
Os03g0804400 Conserved hypothetical protein 241 1e-63
>Os07g0568000 Apolipophorin III-like domain containing protein
Length = 773
Score = 1373 bits (3555), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 681/762 (89%), Positives = 681/762 (89%)
Query: 12 DFPGHEWITPQSSIRAAYQSQTEKGIRKICSELLELKDAIENLCGNMQSKYHAFLRISXX 71
DFPGHEWITPQSSIRAAYQSQTEKGIRKICSELLELKDAIENLCGNMQSKYHAFLRIS
Sbjct: 12 DFPGHEWITPQSSIRAAYQSQTEKGIRKICSELLELKDAIENLCGNMQSKYHAFLRISEE 71
Query: 72 XXXXXXXXXXXXKHVSAQGILVQDLMSGVCRELEMWQKHCKDEHVEEKDLQTELDEILSY 131
KHVSAQGILVQDLMSGVCRELEMWQKHCKDEHVEEKDLQTELDEILSY
Sbjct: 72 VVEAEQELIELQKHVSAQGILVQDLMSGVCRELEMWQKHCKDEHVEEKDLQTELDEILSY 131
Query: 132 DTQDSKVSFLDKLDTLLAEHKIXXXXXXXXXXXKKCMATDDPGKELDAEISTYKTALSKR 191
DTQDSKVSFLDKLDTLLAEHKI KKCMATDDPGKELDAEISTYKTALSKR
Sbjct: 132 DTQDSKVSFLDKLDTLLAEHKIEEALLALETEEKKCMATDDPGKELDAEISTYKTALSKR 191
Query: 192 KSILEDQLVRYSEQPSLSITELRKSLSGLIKIGKGSLAHQVLLKAYGSRLQKNVEAFLPT 251
KSILEDQLVRYSEQPSLSITELRKSLSGLIKIGKGSLAHQVLLKAYGSRLQKNVEAFLPT
Sbjct: 192 KSILEDQLVRYSEQPSLSITELRKSLSGLIKIGKGSLAHQVLLKAYGSRLQKNVEAFLPT 251
Query: 252 CSIYTETYSATLSKIVFXXXXXXXXXXXXLFGDSPMNLNRIIQWAEYEIETFARLVKENS 311
CSIYTETYSATLSKIVF LFGDSPMNLNRIIQWAEYEIETFARLVKENS
Sbjct: 252 CSIYTETYSATLSKIVFSAISKVSKESSSLFGDSPMNLNRIIQWAEYEIETFARLVKENS 311
Query: 312 PLPESVSALRSACICIQTSLTHCSYLESYGLKFSNLLMVLLHPYVEEVLELNFRRLRRKI 371
PLPESVSALRSACICIQTSLTHCSYLESYGLKFSNLLMVLLHPYVEEVLELNFRRLRRKI
Sbjct: 312 PLPESVSALRSACICIQTSLTHCSYLESYGLKFSNLLMVLLHPYVEEVLELNFRRLRRKI 371
Query: 372 VDSAKNDDILLPSPQEGSRLSSSVAPNIMLTSSGKKFMSIVNDVLDQITPMTIVHFGGTI 431
VDSAKNDDILLPSPQEGSRLSSSVAPNIMLTSSGKKFMSIVNDVLDQITPMTIVHFGGTI
Sbjct: 372 VDSAKNDDILLPSPQEGSRLSSSVAPNIMLTSSGKKFMSIVNDVLDQITPMTIVHFGGTI 431
Query: 432 LNKFVQLFDKYVEALIEVLPGASEDDHLVESKEPIEFKAESDAQQIQLIGTAYTVADELL 491
LNKFVQLFDKYVEALIEVLPGASEDDHLVESKEPIEFKAESDAQQIQLIGTAYTVADELL
Sbjct: 432 LNKFVQLFDKYVEALIEVLPGASEDDHLVESKEPIEFKAESDAQQIQLIGTAYTVADELL 491
Query: 492 PAAVSKFFDIQTEKKRIXXXXXXXXXXSIYSIEYKEWKRSLQHSLDKLRDHFCLQYVLSF 551
PAAVSKFFDIQTEKKRI SIYSIEYKEWKRSLQHSLDKLRDHFCLQYVLSF
Sbjct: 492 PAAVSKFFDIQTEKKRIGGTGEGLGSGSIYSIEYKEWKRSLQHSLDKLRDHFCLQYVLSF 551
Query: 552 IYLEGKSRLDARMYLELKTDDLLWECDPSPSLPFQALFVKLRQLASVAGDVLLGKEKIQK 611
IYLEGKSRLDARMYLELKTDDLLWECDPSPSLPFQALFVKLRQLASVAGDVLLGKEKIQK
Sbjct: 552 IYLEGKSRLDARMYLELKTDDLLWECDPSPSLPFQALFVKLRQLASVAGDVLLGKEKIQK 611
Query: 612 VLLSRLTETVVMWLSNEQEFWDVFEDQSIQLRPSGLQQLILDMHFVVEIAVCGRYPHRPV 671
VLLSRLTETVVMWLSNEQEFWDVFEDQSIQLRPSGLQQLILDMHFVVEIAVCGRYPHRPV
Sbjct: 612 VLLSRLTETVVMWLSNEQEFWDVFEDQSIQLRPSGLQQLILDMHFVVEIAVCGRYPHRPV 671
Query: 672 QQLVSVIITRAIAAFSVRNVDPQSSLPEDEWFLDMAKVAINKQXXXXXXXXXXXXPVVVH 731
QQLVSVIITRAIAAFSVRNVDPQSSLPEDEWFLDMAKVAINKQ PVVVH
Sbjct: 672 QQLVSVIITRAIAAFSVRNVDPQSSLPEDEWFLDMAKVAINKQLGTSGSESELEEPVVVH 731
Query: 732 XXXXXXXXXXXXXXXXXXXXXXFASANNDDLETPVYFTDPEA 773
FASANNDDLETPVYFTDPEA
Sbjct: 732 DEISDSEESSISSPSTIGSEDSFASANNDDLETPVYFTDPEA 773
>Os07g0200000 Conserved hypothetical protein
Length = 788
Score = 345 bits (885), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 234/717 (32%), Positives = 365/717 (50%), Gaps = 51/717 (7%)
Query: 21 PQSSIRAAYQSQTEKGIRKICSELLELKDA-IENLCGNMQSKYHAFLRISXXXXXXXXXX 79
P + +++ Q+ EK IR +CS L +LK A E + ++ + Y AF+R S
Sbjct: 62 PDAYVQSKCQTMNEKEIRHLCSYLQDLKKASAEEMRRSVYANYAAFIRTSKEISDLEGEL 121
Query: 80 XXXXKHVSAQGILVQDLMSGVCRELEMWQKHCKDEHVEEKDLQTELDEILSYDTQDSKVS 139
++ Q L+ L GV ++ E E D+ D+ S + Q
Sbjct: 122 LSIRNLLNTQAALIHGLSEGV----QIDSLTSNTEGSAEDDISNVEDQEPS-EIQKWSAD 176
Query: 140 FLDKLDTLLAEHKIXXXXXXXXXXXKKCMATDDPGKEL--DAEISTYKTALSKRKSILED 197
F D LD LLAE ++ + +A+D K+ EI+ + A+S + L D
Sbjct: 177 FPDMLDVLLAERRVDEALDALDEAER--LASDAKLKQTLTATEIAALRRAVSDNRQKLAD 234
Query: 198 QLVRYSEQPSLSITELRKSLSGLIKIGKGSLAHQVLLKAYGSRLQKNVEAFLPTCSIYTE 257
QL + Q S ELR + S L ++G G AH +LL A+ RLQ N++ P+ + Y
Sbjct: 235 QLAEAACQSSTRGIELRAAASALKRLGDGPRAHSLLLNAHNQRLQCNMQTIHPSSTSYGG 294
Query: 258 TYSATLSKIVFXXXXXXXXXXXXLFGDSPMNLNRIIQWAEYEIETFARLVKENSPLPESV 317
Y+A L++ VF +FGD + ++ WA ++ +FA LVK +
Sbjct: 295 AYTAALAQQVFSVVAQALSDSVEVFGDESCYASELVTWATKQVMSFALLVKRH------- 347
Query: 318 SALRSACI----------CIQTSLTHCSYLESYGLKFSNLLMVLLHPYVEEVLELNFRRL 367
+ S+C C+Q SL HCS LE+ GL + +L+ P +E+ L N RR+
Sbjct: 348 --VLSSCAAAGGLRAAAECVQISLGHCSLLEARGLSVAAVLLRQFRPSLEQALYSNIRRI 405
Query: 368 RRKIVDSAKNDDILLPSPQEGSR-LSSSVAPNIML----TSSGKKFMSIVNDVLDQITPM 422
A DD +L P G R L+ S A N+ L ++S +F S+V + + + P+
Sbjct: 406 EESTAALAAADDWILTYPPTGIRPLARSSAANLALQPKLSNSAHRFNSMVQEFFEDVAPL 465
Query: 423 TIVHFGGTILNKFVQLFDKYVEALIEVLPGASEDDHLVES-KEPIEFKAESDAQQIQLIG 481
+ GG+ ++ ++F+ YV LI LPG+ ED+ ++ I AES+ QQ+ L+
Sbjct: 466 LSLQLGGSTMDDITKIFNSYVNLLISALPGSMEDEANIDGLGNKIVRMAESEEQQLALLA 525
Query: 482 TAYTVADELLPAAVSKFFDIQTE-----KKRIXXXXXXXXXXSIYSIEYKEWKRSLQHSL 536
A +A+ELLP A K + +KR E +EWKR LQ +
Sbjct: 526 NASLLAEELLPRAAMKLSSMNHSSMDDLRKRGSDKQNRMP-------EQREWKRKLQRMV 578
Query: 537 DKLRDHFCLQYVLSFIYL-EGKSRLDARMYLELKTDDLLWECDPSPSLPFQALFVKLRQL 595
D+LRD FC Q+ L I+ EG++ L A MY+ + D+ + E + +PSL FQ L+ KL ++
Sbjct: 579 DRLRDSFCRQHALELIFTDEGETHLSADMYISM--DNTVEEPEWAPSLIFQELYAKLNRM 636
Query: 596 ASVAGDVLLGKEKIQKVLLSRLTETVVMWLSNEQEFWDVFEDQSIQLRPSGLQQLILDMH 655
AS+A D+ +G+E+ +L+ RLTETV++WLS +Q FW+ E L P GLQQ LDM
Sbjct: 637 ASIAADMFVGRERFATLLMMRLTETVILWLSEDQAFWEEIEQGPKPLGPLGLQQFYLDMQ 696
Query: 656 FVVEIAVCGRYPHRPVQQLVSVIITRAIAAFSVRNVDPQSSLPEDEWFLDMAKVAIN 712
FV+ I GR+ R V Q++ II RA+AAFS ++P S LP D+WF+D+++ ++
Sbjct: 697 FVI-IFGQGRFLSRHVHQVILDIIDRAMAAFSATGMNPDSVLPGDDWFMDVSQEVVS 752
>Os03g0804400 Conserved hypothetical protein
Length = 641
Score = 241 bits (615), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 181/578 (31%), Positives = 284/578 (49%), Gaps = 26/578 (4%)
Query: 21 PQSSIRAAYQSQTEKGIRKICSELLELKDAI-ENLCGNMQSKYHAFLRISXXXXXXXXXX 79
P + +++ + EK IR +CS L +LK A E + ++ + Y AF+R S
Sbjct: 47 PDAYVQSKCHAMNEKEIRHLCSYLQDLKKASSEEMRRSVYANYAAFIRTSKEISDLEREL 106
Query: 80 XXXXKHVSAQGILVQDLMSGVCRELEMWQKHCKDEHVEEKDLQTELDEILSYDTQDSKVS 139
+S Q L++ L GV ++ + E D E EI ++ T
Sbjct: 107 LSVRNLLSTQSALIRGLSEGV--HIDSLTTGSEGSAEEGTDEDQEPSEIQNWCTD----- 159
Query: 140 FLDKLDTLLAEHKIXXXXXXXXXXXKKCMATDDPGKEL--DAEISTYKTALSKRKSILED 197
F + LD LLAE ++ + + D+ K+ A+I K A+S + L +
Sbjct: 160 FPEMLDVLLAERRVDEALDALDEAER--VVADEKQKQTLTTADILAVKRAISDNRLKLAN 217
Query: 198 QLVRYSEQPSLSITELRKSLSGLIKIGKGSLAHQVLLKAYGSRLQKNVEAFLPTCSIYTE 257
QL + Q S ELR S S L ++G G AH +LL A+ RLQ +++ P+ + ++
Sbjct: 218 QLAEAACQSSTRGVELRASASALKRLGDGPRAHSLLLSAHNQRLQCSMQTIHPSSTSHSG 277
Query: 258 TYSATLSKIVFXXXXXXXXXXXXLFGDSPMNLNRIIQWAEYEIETFARLVKENSPLPESV 317
Y+A+L++ VF LFGD P L+ +I WA + FA LVK ++ L V
Sbjct: 278 AYTASLARQVFSVIAQALSDSLELFGDEPSYLSELITWATEQAMLFALLVKRHA-LAACV 336
Query: 318 SA--LRSACICIQTSLTHCSYLESYGLKFSNLLMVLLHPYVEEVLELNFRRLRRKIVDSA 375
+A LR+A CIQ SL H S LE+ GL S++LM P VE+ LE + RR+ A
Sbjct: 337 AAGGLRAAAECIQISLGHSSLLETRGLSLSSVLMKQFKPSVEQALESSLRRIEESTAALA 396
Query: 376 KNDDILLPSPQEGSR-LSSSVAPNIM----LTSSGKKFMSIVNDVLDQITPMTIVHFGGT 430
DD +L P G R + S A +++ L++SG +F S+V D + + P+ + GG+
Sbjct: 397 AADDWVLTYPPSGIRTFARSSASSLLLQPKLSNSGHRFSSMVQDFFEDVGPLHSLQLGGS 456
Query: 431 ILNKFVQLFDKYVEALIEVLPGASEDDHLVES-KEPIEFKAESDAQQIQLIGTAYTVADE 489
++ +++F+ YV LI LP + +D+ +E I AE++ QQ+ L A +A+E
Sbjct: 457 AMDGLLKIFNSYVNLLISALPHSLDDEANLEGLGNKIVRVAETEEQQLALFANASLLAEE 516
Query: 490 LLPAAVSKFFDIQTEKKRIXXXXXXXXXXSIYSIEYKEWKRSLQHSLDKLRDHFCLQYVL 549
LLP A K + + E +EWK+ LQ +DKL+D FC Q+ L
Sbjct: 517 LLPRAAMKLSSVN--HTGVNDIRKKSVDRQNRVAEQREWKKKLQRIVDKLKDSFCRQHAL 574
Query: 550 SFIYLE-GKSRLDARMYLELKTDDLLWECDPSPSLPFQ 586
I+ E +RL A MY+ + D+ + E + PSL FQ
Sbjct: 575 DLIFTEDDDTRLSAEMYINM--DNTVEEPEWVPSLIFQ 610
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,294,002
Number of extensions: 769144
Number of successful extensions: 1892
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1880
Number of HSP's successfully gapped: 3
Length of query: 773
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 664
Effective length of database: 11,344,475
Effective search space: 7532731400
Effective search space used: 7532731400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)