Os03g0804400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0804400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.57 | 0.218 | 11.4 | 0.478 | 0.537 | 0.35 | -0.544 | -0.124 | 0.239 | 11.7 | 10 | 91 | -- | -- |
| 21.59 | 0.216 | 11.4 | 0.49 | 0.539 | 0.347 | -0.647 | -- | 0.24 | 11.7 | 10.03 | 92 | -- | -- |
| 21.92 | 0.22 | 11.4 | 0.484 | 0.612 | 0.275 | -- | -0.516 | 0.268 | 12.2 | 10 | 91 | -- | -- |
| 23.46 | 0.226 | 11.4 | 0.476 | 0.542 | 0.343 | -- | -- | 0.235 | 11.7 | 10.01 | 92 | -- | -- |
| 25.35 | 0.234 | 11.4 | 0.531 | -- | 0.704 | -- | -0.503 | 0.249 | -- | 5.28 | 107 | -- | -- |
| 24.89 | 0.234 | 11.4 | 0.522 | 0.875 | -- | -0.547 | -- | 0.27 | 12.2 | -- | -- | -- | -- |
| 26.18 | 0.24 | 11.4 | 0.501 | 0.877 | -- | -- | -- | 0.267 | 12.2 | -- | -- | -- | -- |
| 26.8 | 0.241 | 11.4 | 0.509 | -- | 0.7 | -- | -- | 0.245 | -- | 5.27 | 106 | -- | -- |
| 28.84 | 0.25 | 11.4 | -- | 0.552 | 0.337 | -- | -- | 0.184 | 11.7 | 10.02 | 106 | -- | -- |
| 74.57 | 0.404 | 11.4 | 0.473 | -- | -- | -- | -- | 0.254 | -- | -- | -- | -- | -- |
| 32.8 | 0.268 | 11.4 | -- | 0.87 | -- | -- | -- | 0.212 | 12.2 | -- | -- | -- | -- |
| 33.56 | 0.27 | 11.4 | -- | -- | 0.697 | -- | -- | 0.194 | -- | 4.99 | 122 | -- | -- |
| 80.46 | 0.419 | 11.4 | -- | -- | -- | -- | -- | 0.202 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.45 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 19 |
| 2 | 18.53 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 7 | 20 |
| 9 | 18.72 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 17 |
| 10 | 18.75 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 26 | 19.13 | temperature | 20.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 33 | 19.22 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 34 | 19.23 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 20 | 16 |
| 45 | 19.30 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 20 | 7 |
| 55 | 19.37 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 17 |
| 57 | 19.38 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 7 |
| 63 | 19.47 | radiation | 1.0 | 270 | > th | dose independent | sin | 3 | NA |
| 66 | 19.49 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 76 | 19.55 | radiation | 1.0 | 270 | < th | dose independent | sin | 3 | NA |
| 77 | 19.55 | temperature | 20.0 | 90 | > th | dose independent | rect. | 20 | 7 |
| 87 | 19.63 | radiation | 1.0 | 270 | < th | dose independent | rect. | 2 | 15 |
| 93 | 19.65 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 20 | 18 |
| 117 | 19.75 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 9 |
| 124 | 19.77 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 138 | 19.82 | radiation | 1.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 161 | 19.90 | humidity | 80.0 | 10 | > th | dose independent | rect. | 3 | 13 |
| 163 | 19.90 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 182 | 19.95 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 189 | 19.97 | humidity | 80.0 | 10 | > th | dose independent | rect. | 3 | 17 |
| 208 | 20.01 | temperature | 20.0 | 30 | > th | dose independent | rect. | 20 | 16 |
| 212 | 20.01 | wind | 9.0 | 90 | < th | dose dependent | rect. | 9 | 17 |
| 214 | 20.02 | humidity | 60.0 | 10 | > th | dose dependent | sin | 2 | NA |
| 219 | 20.02 | wind | 9.0 | 90 | < th | dose dependent | rect. | 7 | 19 |
| 226 | 20.04 | wind | 5.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 234 | 20.05 | wind | 5.0 | 90 | < th | dose independent | rect. | 9 | 17 |
| 271 | 20.11 | wind | 5.0 | 90 | < th | dose independent | rect. | 7 | 20 |
| 310 | 20.16 | radiation | 20.0 | 10 | < th | dose independent | rect. | 2 | 8 |
| 326 | 20.18 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 342 | 20.18 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 17 |
| 363 | 20.21 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 391 | 20.25 | humidity | 80.0 | 10 | > th | dose independent | sin | 2 | NA |
| 421 | 20.26 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 18 |
| 462 | 20.29 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 475 | 20.31 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 478 | 20.31 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 17 |
| 495 | 20.32 | humidity | 90.0 | 30 | < th | dose dependent | sin | 3 | NA |
| 515 | 20.34 | humidity | 80.0 | 10 | < th | dose independent | rect. | 7 | 7 |
| 529 | 20.35 | humidity | 80.0 | 10 | > th | dose independent | rect. | 3 | 9 |
| 538 | 20.35 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 7 | 7 |
| 553 | 20.36 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 572 | 20.38 | wind | 5.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 590 | 20.39 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 21 | 7 |
| 591 | 20.39 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 7 | 9 |
| 638 | 20.43 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 16 |
| 662 | 20.46 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 673 | 20.47 | radiation | 10.0 | 10 | < th | dose independent | rect. | 3 | 17 |
| 730 | 20.51 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 763 | 20.53 | humidity | 90.0 | 270 | < th | dose independent | rect. | 7 | 4 |
| 778 | 20.54 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 9 |
| 779 | 20.54 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 790 | 20.54 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 793 | 20.55 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 6 |
| 804 | 20.55 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 813 | 20.56 | humidity | 70.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 830 | 20.57 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 20 | 7 |
| 848 | 20.58 | wind | 7.0 | 270 | < th | dose independent | rect. | 20 | 15 |
| 867 | 20.60 | humidity | 80.0 | 10 | < th | dose independent | sin | 3 | NA |
| 869 | 20.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 4 |
| 878 | 20.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 892 | 20.61 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 893 | 20.61 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 16 |
| 894 | 20.61 | wind | 7.0 | 10 | < th | dose independent | rect. | 20 | 16 |
| 909 | 20.62 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 910 | 20.62 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 912 | 20.62 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 913 | 20.62 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 915 | 20.62 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 916 | 20.62 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 953 | 20.63 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 3 | 7 |