Os07g0568000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Apolipophorin III-like domain containing protein.
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Os07g0568000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Apolipophorin III-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.52 | 0.383 | 7.32 | -0.234 | 0.381 | -0.963 | -0.398 | -2.82 | -0.384 | 19.5 | 29.7 | 2128 | -- | -- |
| 70.85 | 0.392 | 7.38 | -0.4 | 0.443 | -1.21 | 0.0997 | -- | -0.394 | 19.9 | 29.7 | 2144 | -- | -- |
| 66.94 | 0.381 | 7.32 | -0.246 | 0.383 | -0.965 | -- | -2.7 | -0.389 | 19.6 | 29.69 | 2126 | -- | -- |
| 67.39 | 0.382 | 7.38 | -0.738 | 0.368 | -1.28 | -- | -- | -0.435 | 19.6 | 29.72 | 2132 | -- | -- |
| 73.48 | 0.399 | 7.34 | -0.35 | -- | -1.13 | -- | -2.09 | -0.481 | -- | 29.5 | 2083 | -- | -- |
| 114.91 | 0.503 | 7.4 | -0.426 | 0.555 | -- | -0.0649 | -- | -0.498 | 19.9 | -- | -- | -- | -- |
| 114.92 | 0.502 | 7.4 | -0.424 | 0.554 | -- | -- | -- | -0.498 | 19.9 | -- | -- | -- | -- |
| 74.01 | 0.401 | 7.37 | -0.748 | -- | -1.37 | -- | -- | -0.471 | -- | 29.7 | 2106 | -- | -- |
| 81.08 | 0.419 | 7.35 | -- | 0.414 | -1.14 | -- | -- | -0.359 | 19.5 | 29.71 | 2123 | -- | -- |
| 131.66 | 0.536 | 7.38 | -0.43 | -- | -- | -- | -- | -0.506 | -- | -- | -- | -- | -- |
| 119.66 | 0.512 | 7.38 | -- | 0.557 | -- | -- | -- | -0.451 | 19.9 | -- | -- | -- | -- |
| 88.65 | 0.439 | 7.36 | -- | -- | -1.22 | -- | -- | -0.435 | -- | 29.6 | 2089 | -- | -- |
| 136.54 | 0.545 | 7.37 | -- | -- | -- | -- | -- | -0.458 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.84 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 2 | 68.17 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 3 | 68.61 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 18 |
| 8 | 68.81 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 13 | 68.92 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 17 | 69.01 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 19 | 69.02 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 47 | 69.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 48 | 69.15 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 72 | 69.27 | temperature | 25 | 1440 | > th | dose dependent | sin | 1 | NA |
| 97 | 69.38 | temperature | 25 | 4320 | > th | dose dependent | rect. | 4 | 6 |
| 154 | 69.61 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 227 | 69.74 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 232 | 69.75 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 255 | 69.80 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 271 | 69.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 7 |
| 275 | 69.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 283 | 69.86 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 23 |
| 294 | 69.90 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 317 | 69.97 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 327 | 70.00 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 16 |
| 331 | 70.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 14 |
| 336 | 70.02 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 12 |
| 338 | 70.02 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 20 |
| 345 | 70.03 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 18 |
| 440 | 70.20 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 21 |
| 455 | 70.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 496 | 70.32 | temperature | 30 | 1440 | < th | dose independent | sin | 3 | NA |
| 497 | 70.32 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 534 | 70.36 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 7 |
| 559 | 70.40 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 689 | 70.56 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 734 | 70.61 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 746 | 70.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 811 | 70.70 | temperature | 30 | 1440 | > th | dose independent | sin | 4 | NA |
| 830 | 70.74 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 904 | 70.85 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 2 |