BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0561400 Os07g0561400|Os07g0561400
(293 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0561400 259 2e-69
Os07g0177900 102 3e-22
Os04g0417400 U box domain containing protein 86 3e-17
Os02g0539200 U box domain containing protein 75 7e-14
>Os07g0561400
Length = 293
Score = 259 bits (662), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 156/293 (53%), Positives = 156/293 (53%)
Query: 1 MRRRASASTAPPPQIRRSLSVIGEVVGRCRHHHHQTXXXXXXXXXXXXXXXXXXXXXXXT 60
MRRRASASTAPPPQIRRSLSVIGEVVGRCRHHHHQT T
Sbjct: 1 MRRRASASTAPPPQIRRSLSVIGEVVGRCRHHHHQTPPPPPPPLSPAADAVVSASGGAGT 60
Query: 61 GHADDRRPANRERRPVXXXXXXXXXXXXSPLAXXXXXXXXXXXXPRARSSRRXXXXXXXX 120
GHADDRRPANRERRPV SPLA PRARSSRR
Sbjct: 61 GHADDRRPANRERRPVGGGGEGGGCGGGSPLAVGMVVCGVGVGVPRARSSRRDPLLLVDV 120
Query: 121 XXXHFPTGSXXXXXXXXXXXXXXXXXXASMXXXXXXXXXXXXXXTRLTSASATXXXXXXX 180
HFPTGS ASM TRLTSASAT
Sbjct: 121 VVPHFPTGSRRGAVADVLLLLRRRIDGASMARPALKLALPAMPPTRLTSASATALVDGVV 180
Query: 181 XXXXXRPSAKAVKVALHVLYRLCPWSQNRVKAVDAGAVSALVRLLLNEGCGGDRRACELX 240
RPSAKAVKVALHVLYRLCPWSQNRVKAVDAGAVSALVRLLLNEGCGGDRRACEL
Sbjct: 181 GVVADRPSAKAVKVALHVLYRLCPWSQNRVKAVDAGAVSALVRLLLNEGCGGDRRACELA 240
Query: 241 XXXXXXXXXXRRGAWCWWHTXXXXXXXXXXXHGXXXXXXXXXXXXXTPWRGTR 293
RRGAWCWWHT HG TPWRGTR
Sbjct: 241 VVATTTSAATRRGAWCWWHTRRGSRRWRVRRHGCPPRAPRAPCARCTPWRGTR 293
>Os07g0177900
Length = 428
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/53 (92%), Positives = 50/53 (94%)
Query: 187 PSAKAVKVALHVLYRLCPWSQNRVKAVDAGAVSALVRLLLNEGCGGDRRACEL 239
PSAKAVKVALHVL RLCPWS+NRVKAVD GAVSALV LLLNEGCGGDRRACEL
Sbjct: 225 PSAKAVKVALHVLCRLCPWSRNRVKAVDVGAVSALVHLLLNEGCGGDRRACEL 277
>Os04g0417400 U box domain containing protein
Length = 451
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/57 (85%), Positives = 52/57 (91%), Gaps = 3/57 (5%)
Query: 186 RPSAKAVKVALHVLYRLCPWSQNRVKAVDAGAVSALVRLLLNE---GCGGDRRACEL 239
RPSAKAVKVALHVL RLCPW++NRVKAVDAGAVSALVRLLL+E G GGDRRACEL
Sbjct: 277 RPSAKAVKVALHVLCRLCPWARNRVKAVDAGAVSALVRLLLDEGCGGGGGDRRACEL 333
>Os02g0539200 U box domain containing protein
Length = 442
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 45/53 (84%), Gaps = 1/53 (1%)
Query: 188 SAKAVKVALHVLYRLCPWSQNRVKAVDAGAVSALVRLLLN-EGCGGDRRACEL 239
S+KAVK ALHVL RLCPW +NRVKAV+AGAV+ALV LLL+ EG GG RRA EL
Sbjct: 275 SSKAVKAALHVLCRLCPWGRNRVKAVEAGAVAALVELLLDEEGGGGRRRAAEL 327
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.131 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,179,170
Number of extensions: 119513
Number of successful extensions: 593
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 589
Number of HSP's successfully gapped: 4
Length of query: 293
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 193
Effective length of database: 11,814,401
Effective search space: 2280179393
Effective search space used: 2280179393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 155 (64.3 bits)