Os04g0417400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : U box domain containing protein.
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Os04g0417400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : U box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 383.3 | 0.92 | 6.01 | 2.1 | 3.33 | -2.97 | 2 | -1.32 | -0.191 | 9.65 | 21.4 | 1367 | -- | -- |
| 382.03 | 0.91 | 5.97 | 2.23 | 3.21 | -2.59 | 2.13 | -- | -0.062 | 9.56 | 21.98 | 1189 | -- | -- |
| 398.22 | 0.929 | 6.01 | 2.1 | 3.32 | -2.91 | -- | -1.46 | -0.195 | 9.64 | 21.44 | 1362 | -- | -- |
| 395.59 | 0.926 | 5.96 | 2.23 | 3.14 | -2.51 | -- | -- | -0.0981 | 9.55 | 22.04 | 1140 | -- | -- |
| 987.08 | 1.46 | 6.05 | 2.16 | -- | -3.21 | -- | -1.58 | 0.0422 | -- | 21.9 | 2287 | -- | -- |
| 618.84 | 1.17 | 6.14 | 1.25 | 3.39 | -- | 1.9 | -- | -0.915 | 9.79 | -- | -- | -- | -- |
| 632.69 | 1.18 | 6.14 | 1.33 | 3.38 | -- | -- | -- | -0.911 | 9.79 | -- | -- | -- | -- |
| 879.7 | 1.38 | 6.01 | 2.48 | -- | -3.23 | -- | -- | 0.0912 | -- | 21.9 | 804 | -- | -- |
| 510.69 | 1.05 | 6.03 | -- | 3.18 | -1.92 | -- | -- | -0.396 | 9.6 | 22.3 | 1061 | -- | -- |
| 1314.21 | 1.69 | 6.23 | 1.29 | -- | -- | -- | -- | -0.909 | -- | -- | -- | -- | -- |
| 678.98 | 1.22 | 6.18 | -- | 3.38 | -- | -- | -- | -1.06 | 9.76 | -- | -- | -- | -- |
| 934.09 | 1.42 | 6.04 | -- | -- | -2.99 | -- | -- | -0.0538 | -- | 25.02 | 770 | -- | -- |
| 1358.21 | 1.72 | 6.27 | -- | -- | -- | -- | -- | -1.05 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 384.97 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 17 |
| 12 | 386.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 10 |
| 14 | 386.68 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 20 | 387.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 24 | 387.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 30 | 387.57 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 33 | 387.71 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 69 | 388.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 72 | 388.38 | temperature | 25 | 1440 | < th | dose dependent | sin | 7 | NA |
| 77 | 388.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 139 | 389.95 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 153 | 390.21 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 181 | 390.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 196 | 391.25 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 7 |
| 220 | 391.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 7 |
| 248 | 392.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 382 | 394.27 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 479 | 395.82 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 523 | 396.68 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 677 | 399.72 | temperature | 20 | 1440 | > th | dose independent | sin | 6 | NA |
| 763 | 401.57 | temperature | 20 | 1440 | < th | dose independent | sin | 6 | NA |
| 828 | 402.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |