Os07g0561400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os07g0561400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.08 | 0.418 | 8.7 | 1.65 | 0.928 | 0.747 | -1.81 | -1.49 | 0.0503 | 1.94 | 21.69 | 10 | -- | -- |
| 80.95 | 0.419 | 8.72 | 1.55 | 0.896 | 1.1 | -2.15 | -- | 0.0362 | 1.86 | 21.35 | 13 | -- | -- |
| 88.04 | 0.44 | 8.67 | 1.88 | 0.946 | 0.514 | -- | -2.81 | 0.106 | 2.3 | 22.82 | 14 | -- | -- |
| 97.92 | 0.461 | 8.71 | 1.63 | 0.934 | 1.39 | -- | -- | 0.0331 | 2.28 | 20.13 | 13 | -- | -- |
| 125.32 | 0.524 | 8.61 | 2.27 | -- | 1.64 | -- | -3.83 | 0.32 | -- | 37.31 | 10 | -- | -- |
| 91.64 | 0.449 | 8.74 | 1.35 | 1.01 | -- | -2.2 | -- | -0.0668 | 1.81 | -- | -- | -- | -- |
| 110.05 | 0.491 | 8.73 | 1.42 | 1.02 | -- | -- | -- | -0.0557 | 2.17 | -- | -- | -- | -- |
| 136.42 | 0.546 | 8.67 | 1.75 | -- | 1.32 | -- | -- | 0.214 | -- | 29.98 | 6 | -- | -- |
| 161.76 | 0.596 | 8.76 | -- | 1.01 | 0.4 | -- | -- | -0.189 | 2.24 | 21 | 58 | -- | -- |
| 172.29 | 0.613 | 8.72 | 1.46 | -- | -- | -- | -- | -0.0312 | -- | -- | -- | -- | -- |
| 163.18 | 0.598 | 8.77 | -- | 1.05 | -- | -- | -- | -0.214 | 2.2 | -- | -- | -- | -- |
| 212.83 | 0.682 | 8.73 | -- | -- | 0.864 | -- | -- | -0.0603 | -- | 30.41 | 9 | -- | -- |
| 228.73 | 0.706 | 8.76 | -- | -- | -- | -- | -- | -0.193 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.56 | temperature | 20.0 | 90 | > th | dose independent | rect. | 7 | 20 |
| 5 | 73.77 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 18 |
| 18 | 75.00 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 8 |
| 27 | 75.54 | temperature | 20.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 48 | 76.26 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 65 | 76.84 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 69 | 76.95 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 15 |
| 71 | 76.98 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 15 |
| 76 | 77.02 | humidity | 90.0 | 270 | < th | dose independent | rect. | 5 | 18 |
| 81 | 77.05 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 4 | 5 |
| 92 | 77.27 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 96 | 77.33 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 97 | 77.34 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 7 | 20 |
| 115 | 77.64 | temperature | 20.0 | 10 | > th | dose independent | rect. | 18 | 9 |
| 117 | 77.66 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 3 | 14 |
| 135 | 77.87 | temperature | 20.0 | 10 | > th | dose independent | rect. | 18 | 22 |
| 138 | 77.90 | temperature | 15.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 142 | 77.92 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 3 | 9 |
| 144 | 77.93 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 149 | 77.95 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 160 | 78.06 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 23 |
| 182 | 78.25 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 3 | 7 |
| 220 | 78.52 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 1 | 17 |
| 225 | 78.56 | humidity | 80.0 | 30 | > th | dose dependent | sin | 1 | NA |
| 229 | 78.58 | humidity | 70.0 | 90 | > th | dose dependent | sin | 5 | NA |
| 230 | 78.59 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 18 |
| 231 | 78.59 | humidity | 70.0 | 30 | > th | dose dependent | sin | 3 | NA |
| 240 | 78.61 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 11 | 19 |
| 253 | 78.65 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 20 |
| 278 | 78.75 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 279 | 78.75 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 281 | 78.77 | temperature | 20.0 | 90 | > th | dose independent | rect. | 20 | 18 |
| 305 | 78.90 | temperature | 20.0 | 90 | < th | dose independent | rect. | 10 | 21 |
| 336 | 79.02 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 16 |
| 337 | 79.02 | temperature | 20.0 | 10 | > th | dose independent | rect. | 18 | 20 |
| 339 | 79.02 | radiation | 1.0 | 270 | < th | dose dependent | sin | 4 | NA |
| 343 | 79.04 | radiation | 20.0 | 10 | < th | dose independent | rect. | 3 | 6 |
| 388 | 79.20 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 7 |
| 389 | 79.21 | radiation | 1.0 | 270 | < th | dose independent | sin | 4 | NA |
| 398 | 79.23 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 11 | 20 |
| 399 | 79.24 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 7 |
| 406 | 79.26 | humidity | 90.0 | 90 | > th | dose independent | rect. | 3 | 17 |
| 408 | 79.27 | humidity | 90.0 | 270 | > th | dose independent | rect. | 1 | 19 |
| 416 | 79.30 | temperature | 20.0 | 720 | < th | dose independent | rect. | 9 | 7 |
| 420 | 79.30 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 437 | 79.35 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 452 | 79.39 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 470 | 79.42 | humidity | 90.0 | 270 | > th | dose independent | rect. | 1 | 17 |
| 477 | 79.44 | humidity | 90.0 | 270 | < th | dose independent | rect. | 4 | 9 |
| 487 | 79.46 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 526 | 79.58 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 17 |
| 539 | 79.62 | temperature | 20.0 | 10 | < th | dose independent | rect. | 11 | 20 |
| 549 | 79.64 | humidity | 90.0 | 90 | < th | dose independent | sin | 23 | NA |
| 567 | 79.68 | humidity | 90.0 | 10 | < th | dose independent | rect. | 7 | 9 |
| 576 | 79.70 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 579 | 79.71 | humidity | 90.0 | 720 | < th | dose independent | rect. | 2 | 17 |
| 615 | 79.77 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 16 |
| 624 | 79.79 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 3 | 6 |
| 654 | 79.85 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 4 | 4 |
| 694 | 79.93 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 10 |
| 737 | 80.01 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 739 | 80.01 | wind | 7.0 | 270 | < th | dose independent | rect. | 14 | 15 |
| 740 | 80.01 | humidity | 90.0 | 270 | < th | dose independent | rect. | 15 | 23 |
| 747 | 80.02 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 751 | 80.03 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 759 | 80.05 | radiation | 1.0 | 270 | > th | dose independent | sin | 3 | NA |
| 760 | 80.05 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 806 | 80.10 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 822 | 80.13 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 832 | 80.14 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 19 |
| 848 | 80.16 | humidity | 80.0 | 10 | > th | dose independent | rect. | 3 | 10 |
| 905 | 80.25 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 4 | 16 |
| 911 | 80.26 | humidity | 80.0 | 10 | > th | dose independent | rect. | 3 | 15 |
| 916 | 80.27 | humidity | 90.0 | 90 | > th | dose independent | rect. | 3 | 20 |
| 923 | 80.28 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 4 | 6 |
| 933 | 80.29 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 961 | 80.32 | humidity | 90.0 | 10 | < th | dose independent | rect. | 7 | 7 |
| 983 | 80.35 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |