BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0521300 Os07g0521300|AK106593
(482 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0521300 Conserved hypothetical protein 910 0.0
Os07g0521600 Similar to NBS-LRR protein (Fragment) 134 2e-31
Os07g0521100 Leucine-rich repeat, typical subtype containin... 94 2e-19
>Os07g0521300 Conserved hypothetical protein
Length = 482
Score = 910 bits (2352), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/482 (92%), Positives = 448/482 (92%)
Query: 1 KLRKVPFESLGLATKEIIIKWCDPYDDTFSRYLQGLNGLTRLEVGGSRRCKLIIPCKQLM 60
KLRKVPFESLGLATKEIIIKWCDPYDDTFSRYLQGLNGLTRLEVGGSRRCKLIIPCKQLM
Sbjct: 1 KLRKVPFESLGLATKEIIIKWCDPYDDTFSRYLQGLNGLTRLEVGGSRRCKLIIPCKQLM 60
Query: 61 SLEYLHIQGFGDVCIKSGLWYIKNLKNILIIDCSTVVTDSNEESAQEDKQSPTQIDRTMH 120
SLEYLHIQGFGDVCIKSGLWYIKNLKNILIIDCSTVVTDSNEESAQEDKQSPTQIDRTMH
Sbjct: 61 SLEYLHIQGFGDVCIKSGLWYIKNLKNILIIDCSTVVTDSNEESAQEDKQSPTQIDRTMH 120
Query: 121 SLTHLTLGGDTMQKVGLEFVIPQTPSLRNLRLDIVQGHTSITKKWLQYLTSLQELEIYSC 180
SLTHLTLGGDTMQKVGLEFVIPQTPSLRNLRLDIVQGHTSITKKWLQYLTSLQELEIYSC
Sbjct: 121 SLTHLTLGGDTMQKVGLEFVIPQTPSLRNLRLDIVQGHTSITKKWLQYLTSLQELEIYSC 180
Query: 181 HALPXXXXXXXXXRRCTLKYCHWMYSIPPNSLPGNLKELQIEECSFELEARCQNPTGDAR 240
HALP RRCTLKYCHWMYSIPPNSLPGNLKELQIEECSFELEARCQNPTGDAR
Sbjct: 181 HALPSSLSSLSSLRRCTLKYCHWMYSIPPNSLPGNLKELQIEECSFELEARCQNPTGDAR 240
Query: 241 PEGRKIELWQKRKMGEWRERKLEHGRTKLIEMQQKNESLGIPMSWREKSPKSSKGESLYQ 300
PEGRKIELWQKRKMGEWRERKLEHGRTKLIEMQQKNESLGIPMSWREKSPKSSKGESLYQ
Sbjct: 241 PEGRKIELWQKRKMGEWRERKLEHGRTKLIEMQQKNESLGIPMSWREKSPKSSKGESLYQ 300
Query: 301 SDKYWSRGQRMQEGHEWPRKQHMEEQSFIEKEKSSSLNEQAXXXXXXXXXXXXWLQQSEG 360
SDKYWSRGQRMQEGHEWPRKQHMEEQSFIEKEKSSSLNEQA WLQQSEG
Sbjct: 301 SDKYWSRGQRMQEGHEWPRKQHMEEQSFIEKEKSSSLNEQAEEDESKKEPLEEWLQQSEG 360
Query: 361 DQWPEREWELYSWVERKLKKELDRNKDDPSSLMXXXXXXXXXXXXXFHSETLGKDWPNIC 420
DQWPEREWELYSWVERKLKKELDRNKDDPSSLM FHSETLGKDWPNIC
Sbjct: 361 DQWPEREWELYSWVERKLKKELDRNKDDPSSLMKEREEWLKEEERKFHSETLGKDWPNIC 420
Query: 421 HVPYLCGGKDCTESLYLKLQILQTWTHFLFHDSHALVKEILHLNQESRQCFCFRHHLSAQ 480
HVPYLCGGKDCTESLYLKLQILQTWTHFLFHDSHALVKEILHLNQESRQCFCFRHHLSAQ
Sbjct: 421 HVPYLCGGKDCTESLYLKLQILQTWTHFLFHDSHALVKEILHLNQESRQCFCFRHHLSAQ 480
Query: 481 RT 482
RT
Sbjct: 481 RT 482
>Os07g0521600 Similar to NBS-LRR protein (Fragment)
Length = 933
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 150/310 (48%), Gaps = 55/310 (17%)
Query: 1 KLRKVPFESLGLATKEIIIKWCDPYDDTFSRYLQGLNGLTRLEVGGSRRCKLIIPCKQLM 60
LR++P SLGLA +++ + C Y +T RYLQ L LT L + + KLI+PC+ L+
Sbjct: 555 NLRELPLMSLGLAIRKLSLTGCGSYAETVFRYLQKLTSLTHLSINDCSQ-KLILPCQNLI 613
Query: 61 SLEYLHIQGFGDVCIKSGLWYIKNLKNILIIDCSTVVTDSNEES---------------- 104
SLE LH+ ++ + G+ + NLKN+ I C +++ EE
Sbjct: 614 SLENLHLSNCKELYFEGGILRLNNLKNLHISGCRKIISTVEEEINRLFSNWEIRLGKDQS 673
Query: 105 --------------AQEDKQSPT----QIDRTMHSLTHLT-LGGDTM-QKVGLEFVIPQT 144
+ ++ P Q + MH+L +LT L D + Q L+ + +
Sbjct: 674 LVLKSGLLNIAKELGTKRRELPLPGSPQKEEFMHTLQYLTDLTMDNLSQSSDLDNFLCKL 733
Query: 145 PSLRNL---RLDIVQGHTSITKKWLQYLTSLQELEIYSCHAL---PXXXXXXXXXRRCTL 198
+LR L ++D++ H +KWL+ +TSLQELE C+ L P ++ +
Sbjct: 734 SALRTLCLHKIDVISLHQ---EKWLEQITSLQELEFSCCYLLRQLPSNLVTLSSLKKLNM 790
Query: 199 KYCHWMYSIPPNSLPGNLKELQIEECSFELEARCQNPTGDARPEGRKIELWQKRKMGEWR 258
+ C ++S+P LPGNL+ELQI CS LEARCQ G E W K+K GEW
Sbjct: 791 QSCFQIHSLPLKGLPGNLRELQILGCSPILEARCQKEDG---------ETWVKKKRGEWH 841
Query: 259 ERKLEHGRTK 268
+ + R K
Sbjct: 842 KETINEYRQK 851
>Os07g0521100 Leucine-rich repeat, typical subtype containing protein
Length = 578
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 121/264 (45%), Gaps = 22/264 (8%)
Query: 1 KLRKVPFESLGLATKEIIIKWCDPYDDTFSRYLQGLNGLTRLEVGGSRRCKLIIPCKQLM 60
KL +P E+L + KE+ + C Y YL+ L LT+L + L+IPC L
Sbjct: 314 KLSLLPIETLSSSVKELHLSSCTSYISMLPAYLKRLTSLTKLSIQDCS-ATLLIPCHSLT 372
Query: 61 SLEYLHIQGFGDVCIKSGLWYIKNLKNILIIDCSTVVTDSNEESAQEDKQSPTQIDRTMH 120
LE+L ++ DV + G+ Y LK + + C V + E+++ ++ S + +
Sbjct: 373 LLEHLQLESCFDVHFEGGMQYFTKLKKLEVHRCFDVTQNIYEQTSLVERYS---LMGGLQ 429
Query: 121 SLTHLTLGGDTMQKVGLEFVIPQTPSLRNLRL---DIVQGHTSITKKWLQYLTSLQELEI 177
SL HL + D ++ S+R ++ D+ + T+ ++WLQ L SLQE++
Sbjct: 430 SLIHLVID-DRFMYYRYYHMLNTLCSIRTMKFCAFDLSE-FTTEDEEWLQQLQSLQEIQF 487
Query: 178 YSCHAL---PXXXXXXXXXRRCTLKYCHWMYSIPPNSLPGNLKELQIEECSFELEARCQN 234
SC L P ++ L C + S+P N LP NLKE + S LE +CQ
Sbjct: 488 ASCRNLLRLPSNLNNMCNLKKVVLNDCCKLQSLPLNGLPDNLKEFHVSGGSEVLEQQCQK 547
Query: 235 PTGD----------ARPEGRKIEL 248
GD R GR I++
Sbjct: 548 TDGDEWQKISHVPYVRINGRTIQM 571
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,591,157
Number of extensions: 666297
Number of successful extensions: 1715
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1710
Number of HSP's successfully gapped: 3
Length of query: 482
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 377
Effective length of database: 11,553,331
Effective search space: 4355605787
Effective search space used: 4355605787
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)