Os07g0521100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, typical subtype containing protein.
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Os07g0521100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, typical subtype containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.95 | 0.441 | 8.12 | 2.06 | 0.887 | -0.256 | -0.305 | 3.92 | 0.525 | 19 | 998.5 | 12498 | -- | -- |
| 93.34 | 0.45 | 8.17 | 1.85 | 0.898 | 0.485 | -0.195 | -- | 0.573 | 19 | 999.3 | 15513 | -- | -- |
| 87.9 | 0.437 | 8.11 | 2.12 | 0.894 | -0.4 | -- | 4.57 | 0.525 | 19.1 | 999 | 11869 | -- | -- |
| 93.52 | 0.45 | 8.16 | 1.86 | 0.882 | 0.485 | -- | -- | 0.579 | 19.1 | 999.1 | 15579 | -- | -- |
| 129.38 | 0.53 | 8.09 | 2.11 | -- | -0.421 | -- | 4.72 | 0.5 | -- | 999.1 | 11977 | -- | -- |
| 100.29 | 0.469 | 8.18 | 1.96 | 0.895 | -- | -0.302 | -- | 0.512 | 19.1 | -- | -- | -- | -- |
| 100.53 | 0.47 | 8.18 | 1.97 | 0.894 | -- | -- | -- | 0.511 | 19.1 | -- | -- | -- | -- |
| 135.2 | 0.542 | 8.15 | 1.85 | -- | 0.493 | -- | -- | 0.566 | -- | 999.3 | 16190 | -- | -- |
| 178.27 | 0.622 | 8.17 | -- | 0.819 | 1.01 | -- | -- | 0.506 | 19 | 998.9 | 14605 | -- | -- |
| 142.63 | 0.558 | 8.16 | 1.95 | -- | -- | -- | -- | 0.495 | -- | -- | -- | -- | -- |
| 202.85 | 0.666 | 8.23 | -- | 0.873 | -- | -- | -- | 0.292 | 19.2 | -- | -- | -- | -- |
| 217.35 | 0.687 | 8.17 | -- | -- | 0.947 | -- | -- | 0.436 | -- | 998.9 | 14646 | -- | -- |
| 243.23 | 0.728 | 8.21 | -- | -- | -- | -- | -- | 0.279 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.25 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 2 | 85.31 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 8 | 85.89 | atmosphere | 1010 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 15 | 86.00 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 77 | 86.16 | atmosphere | 1010 | 14400 | < th | dose dependent | sin | 19 | NA |
| 321 | 86.30 | atmosphere | 1010 | 14400 | < th | dose dependent | no | NA | NA |
| 361 | 86.31 | atmosphere | 1010 | 14400 | < th | dose dependent | rect. | 22 | 22 |
| 365 | 86.31 | atmosphere | 1010 | 14400 | < th | dose dependent | rect. | 19 | 23 |
| 392 | 86.33 | atmosphere | 995 | 14400 | > th | dose dependent | sin | 18 | NA |
| 423 | 86.34 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 5 | 18 |
| 510 | 86.38 | atmosphere | 1010 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 534 | 86.39 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 536 | 86.39 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 6 | 12 |
| 623 | 86.42 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 5 | 16 |
| 662 | 86.43 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 807 | 86.48 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 7 | 8 |
| 809 | 86.48 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 5 | 13 |
| 840 | 86.49 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 6 | 11 |
| 846 | 86.49 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 14 | 20 |