BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0512000 Os07g0512000|AK108133
(137 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0512000 Prephenate dehydratase domain containing protein 290 3e-79
Os07g0694600 Prephenate dehydratase domain containing protein 70 4e-13
Os03g0286200 Similar to Prephenate dehydratase-like 69 9e-13
>Os07g0512000 Prephenate dehydratase domain containing protein
Length = 137
Score = 290 bits (741), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MLHPISQDTWYWPKLLTSPRNMANIREEGSMIYYIFQSNARCYKLVALIYQTSIVFGLEE 60
MLHPISQDTWYWPKLLTSPRNMANIREEGSMIYYIFQSNARCYKLVALIYQTSIVFGLEE
Sbjct: 1 MLHPISQDTWYWPKLLTSPRNMANIREEGSMIYYIFQSNARCYKLVALIYQTSIVFGLEE 60
Query: 61 GPGILFKALSAFWMRDINLSKIESRPNKREPMRTQGNEKYATLLLHFQHSSLYVKNAYVY 120
GPGILFKALSAFWMRDINLSKIESRPNKREPMRTQGNEKYATLLLHFQHSSLYVKNAYVY
Sbjct: 61 GPGILFKALSAFWMRDINLSKIESRPNKREPMRTQGNEKYATLLLHFQHSSLYVKNAYVY 120
Query: 121 QIMEQKGKKWMCYQHFF 137
QIMEQKGKKWMCYQHFF
Sbjct: 121 QIMEQKGKKWMCYQHFF 137
>Os07g0694600 Prephenate dehydratase domain containing protein
Length = 364
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 46/60 (76%), Gaps = 1/60 (1%)
Query: 50 YQTSIVFGLEEGPGILFKALSAFWMRDINLSKIESRPNKREPMRTQGNEKYATLLLHFQH 109
++TSIVF LEEGPG LFKAL+ F +R INL+K+ESRP+K++P+R ++ + L HF +
Sbjct: 264 FKTSIVFSLEEGPGQLFKALAVFALRKINLTKMESRPHKKKPLRI-ADDNCSAPLKHFDY 322
>Os03g0286200 Similar to Prephenate dehydratase-like
Length = 399
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 38/44 (86%)
Query: 50 YQTSIVFGLEEGPGILFKALSAFWMRDINLSKIESRPNKREPMR 93
++TSIVF LEEGPG LFKAL F +R+INL+KIESRP+K+ P+R
Sbjct: 299 FKTSIVFSLEEGPGQLFKALGVFALREINLTKIESRPHKKRPLR 342
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.136 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,291,630
Number of extensions: 142437
Number of successful extensions: 238
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 3
Length of query: 137
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 47
Effective length of database: 12,336,541
Effective search space: 579817427
Effective search space used: 579817427
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 150 (62.4 bits)