BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0510600 Os07g0510600|AK105478
         (166 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0510600  Conserved hypothetical protein                      303   5e-83
Os07g0503200  Conserved hypothetical protein                      157   3e-39
Os01g0735450  Conserved hypothetical protein                       72   1e-13
Os06g0343500  Conserved hypothetical protein                       69   1e-12

>Os07g0510600 Conserved hypothetical protein
          Length = 166

 Score =  303 bits (775), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 156/166 (93%), Positives = 156/166 (93%)

Query: 1   MEFHPQCVTNPPTAAWARMSFCGARVGHTSPLPLVLSKNPXXXXXXXXXXVGTRCPGRLS 60
           MEFHPQCVTNPPTAAWARMSFCGARVGHTSPLPLVLSKNP          VGTRCPGRLS
Sbjct: 1   MEFHPQCVTNPPTAAWARMSFCGARVGHTSPLPLVLSKNPSGRSSSSMASVGTRCPGRLS 60

Query: 61  LGGPRSTHRKRCSLRSSAAAISRTLGGGRRPLLPKQTSSTDAGGCASSHRTHSCGCSGGG 120
           LGGPRSTHRKRCSLRSSAAAISRTLGGGRRPLLPKQTSSTDAGGCASSHRTHSCGCSGGG
Sbjct: 61  LGGPRSTHRKRCSLRSSAAAISRTLGGGRRPLLPKQTSSTDAGGCASSHRTHSCGCSGGG 120

Query: 121 VSAITGPIAYTVGAGTPRVHRPSAMASMTLCSSSAAVLTMKPVAFM 166
           VSAITGPIAYTVGAGTPRVHRPSAMASMTLCSSSAAVLTMKPVAFM
Sbjct: 121 VSAITGPIAYTVGAGTPRVHRPSAMASMTLCSSSAAVLTMKPVAFM 166



>Os07g0503200 Conserved hypothetical protein
          Length = 217

 Score =  157 bits (397), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/176 (53%), Positives = 106/176 (60%), Gaps = 11/176 (6%)

Query: 2   EFHPQCVTNPPTAAWARMSFCGARVGHTSPLPLVLSKNPXXXXXXXXXXV------GTRC 55
           EFHP CVT PP A WAR+SFCGA VGHT PLPLVLS+NP          V      G   
Sbjct: 32  EFHPPCVTKPPMAGWARISFCGAHVGHTMPLPLVLSRNPSGRSSSRFASVGCSDPSGAPV 91

Query: 56  PGRLSLGGPRSTHRKRCSLRSSAAAISRTLGGGRRPLLPKQTSSTDAGGCASSHRTHSCG 115
           P   + GGPR T RKR   RSSAA IS T     +P+LPKQ ++TDAGGC SSH  HSCG
Sbjct: 92  PDSAAGGGPRRTQRKRWPERSSAAVISTTCAASNQPMLPKQRNTTDAGGCPSSHAMHSCG 151

Query: 116 CSGGGV-----SAITGPIAYTVGAGTPRVHRPSAMASMTLCSSSAAVLTMKPVAFM 166
            S   +     S  TGP+ YT GA  P  HRPSAMA+    SSS+AV  M PVA M
Sbjct: 152 GSELSLLSLPPSESTGPMGYTGGAARPGTHRPSAMAARGPGSSSSAVFAMMPVASM 207



>Os01g0735450 Conserved hypothetical protein
          Length = 192

 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 74/166 (44%), Gaps = 6/166 (3%)

Query: 2   EFHPQCVTNPPTAAWARMSFCGARVGHTSPLPLVLSKNPXXXXXXXXXXVGTRCPGRLSL 61
           EFHPQC TNPPTA  +  S CG     TSPLPLV  + P            T C      
Sbjct: 12  EFHPQCDTNPPTAPCSSTSRCGEHDMTTSPLPLVRRRKPSGKMSASRSGPVT-CS---KP 67

Query: 62  GGPRSTHRKRCSLRSSAAAISRTLGGGRRPLLPKQTSSTDAGGCASSHRTHSC-GCSGGG 120
           GG R+THR R  L S   A          P LPKQ ++T A GCASS   HS        
Sbjct: 68  GGGRTTHRNRWPLVSRPTATCLICSTLNTPKLPKQRNNTLALGCASSQARHSWRSVLSSS 127

Query: 121 VSAITGPIAYTVGAGTP-RVHRPSAMASMTLCSSSAAVLTMKPVAF 165
              I+GP+  + G   P  V RP+ MAS    S    + T+ P   
Sbjct: 128 RGFISGPMQCSGGVRRPGNVQRPATMASAARRSREWQLFTITPCEL 173



>Os06g0343500 Conserved hypothetical protein
          Length = 227

 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 61/135 (45%), Gaps = 23/135 (17%)

Query: 1   MEFHPQCVTNPPTAAWARMSFCGARVG-HTSPLPLVLSKNPXXXXXXXXXXVGTRCPGRL 59
           +EFHPQCVTN P  A    + CG +    T+PL  V +KNP                GR 
Sbjct: 106 VEFHPQCVTNAPVDACCSTATCGTQDAVTTTPLSAVRAKNPS---------------GRR 150

Query: 60  SLG-------GPRSTHRKRCSLRSSAAAISRTLGGGRRPLLPKQTSSTDAGGCASSHRTH 112
            +        G RS H+  CS  S   AIS T  G   P LPKQ ++T   GCASS   H
Sbjct: 151 DIAASGFVPAGARSAHKNLCSDLSRPVAISLTCSGESAPRLPKQRNTTLRSGCASSQARH 210

Query: 113 SCGCSGGGVSAITGP 127
            C  S    S I GP
Sbjct: 211 GCLSSSAPPSVINGP 225



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.130    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,668,046
Number of extensions: 298623
Number of successful extensions: 1302
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1298
Number of HSP's successfully gapped: 4
Length of query: 166
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 73
Effective length of database: 12,179,899
Effective search space: 889132627
Effective search space used: 889132627
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)