Os07g0510600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0510600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 273.03 | 0.776 | 6.32 | -1.01 | 2.19 | -1.88 | 1.88 | -1.15 | -0.807 | 9.66 | 71.19 | 1193 | -- | -- |
| 275.54 | 0.773 | 6.35 | -1.12 | 2.18 | -1.94 | 1.65 | -- | -0.863 | 9.68 | 72 | 1192 | -- | -- |
| 285.33 | 0.787 | 6.32 | -1.02 | 2.12 | -1.84 | -- | -0.587 | -0.818 | 9.6 | 71 | 1215 | -- | -- |
| 285.9 | 0.788 | 6.34 | -1.1 | 2.18 | -1.91 | -- | -- | -0.856 | 9.64 | 71.94 | 1194 | -- | -- |
| 484.12 | 1.02 | 6.37 | -0.797 | -- | -1.69 | -- | -1 | -0.738 | -- | 72 | 1443 | -- | -- |
| 401.86 | 0.94 | 6.29 | -0.774 | 1.84 | -- | 1.4 | -- | -0.587 | 8.94 | -- | -- | -- | -- |
| 408.57 | 0.947 | 6.29 | -0.726 | 1.84 | -- | -- | -- | -0.586 | 8.92 | -- | -- | -- | -- |
| 486.65 | 1.03 | 6.4 | -1.07 | -- | -1.73 | -- | -- | -0.836 | -- | 71.81 | 1444 | -- | -- |
| 317.18 | 0.829 | 6.31 | -- | 2.14 | -1.76 | -- | -- | -0.721 | 9.63 | 71.14 | 1188 | -- | -- |
| 601.37 | 1.15 | 6.34 | -0.727 | -- | -- | -- | -- | -0.574 | -- | -- | -- | -- | -- |
| 422.48 | 0.961 | 6.27 | -- | 1.83 | -- | -- | -- | -0.505 | 8.95 | -- | -- | -- | -- |
| 515.51 | 1.06 | 6.36 | -- | -- | -1.63 | -- | -- | -0.67 | -- | 72.12 | 1438 | -- | -- |
| 615.32 | 1.16 | 6.32 | -- | -- | -- | -- | -- | -0.493 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 282.09 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 3 | 283.56 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 6 | 285.42 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 9 | 286.27 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 10 | 286.92 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 17 | 288.06 | humidity | 80 | 1440 | < th | dose dependent | rect. | 17 | 21 |
| 18 | 288.23 | humidity | 90 | 1440 | < th | dose dependent | rect. | 6 | 14 |
| 35 | 288.61 | humidity | 90 | 1440 | < th | dose dependent | sin | 0 | NA |
| 41 | 288.70 | humidity | 50 | 1440 | > th | dose dependent | rect. | 7 | 12 |
| 103 | 289.56 | humidity | 50 | 1440 | > th | dose dependent | sin | 0 | NA |
| 107 | 289.58 | humidity | 80 | 1440 | < th | dose dependent | rect. | 7 | 7 |
| 165 | 290.18 | humidity | 50 | 1440 | > th | dose dependent | rect. | 7 | 8 |
| 219 | 290.55 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 271 | 291.00 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 286 | 291.10 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 345 | 291.88 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 417 | 292.68 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 13 |
| 452 | 293.00 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 21 |
| 455 | 293.01 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 16 |
| 481 | 293.15 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 22 |
| 487 | 293.16 | humidity | 70 | 1440 | > th | dose independent | rect. | 3 | 19 |
| 503 | 293.18 | humidity | 70 | 1440 | > th | dose independent | rect. | 3 | 17 |
| 513 | 293.18 | humidity | 70 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 514 | 293.19 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 523 | 293.19 | humidity | 70 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 557 | 293.28 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 592 | 293.64 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 667 | 294.35 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 831 | 296.10 | humidity | 70 | 1440 | > th | dose independent | sin | 10 | NA |
| 865 | 296.36 | humidity | 70 | 1440 | > th | dose independent | sin | 22 | NA |
| 888 | 296.52 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |