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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0503200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.59 (0.0326) R2 : 0.62
β1 : 3.01 (0.125) R2dD : 0.571 R2D : 0.245
β2 : 0.824 (0.0836) R2dC : 0.0816 R2C : 0.028
β3 : 1.18 (0.109) R2dE : 0.121 R2E : -0.184
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.04 (0.0733) R2dN8 : 0.257 R2N8 : -0.0148
σ : 0.598
deviance : 165.1
__
_____
C
peak time of C : 5.91
E
wheather : atmosphere
threshold : 1010
memory length : 6706
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
164.24 0.602 4.6 2.97 0.827 1.19 -0.569 0.17 1.03 5.89 1010 6554 -- --
164.3 0.597 4.59 3.01 0.827 1.17 -0.58 -- 1.03 5.89 1010 6547 -- --
164.99 0.598 4.6 2.95 0.825 1.21 -- 0.229 1.03 5.9 1010 6710 -- --
165.1 0.598 4.59 3.01 0.824 1.18 -- -- 1.04 5.91 1010 6706 -- --
200.19 0.659 4.62 2.97 -- 1.16 -- 0.199 1.04 -- 1011 6544 -- --
206.75 0.674 4.66 2.56 0.799 -- -0.508 -- 0.746 5.96 -- -- -- --
207.39 0.674 4.66 2.55 0.796 -- -- -- 0.748 5.99 -- -- -- --
200.21 0.659 4.6 3.03 -- 1.1 -- -- 1.06 -- 1011 7307 -- --
373.91 0.901 4.67 -- 0.866 0.584 -- -- 0.636 5.68 1011 16475 -- --
240.21 0.724 4.67 2.58 -- -- -- -- 0.766 -- -- -- -- --
379.21 0.911 4.72 -- 0.835 -- -- -- 0.464 5.84 -- -- -- --
404.8 0.94 4.74 -- -- 0.586 -- -- 0.476 -- 1010 16428 -- --
415.34 0.951 4.74 -- -- -- -- -- 0.48 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 153.74 temperature 10 270 > th dose dependent rect. 7 20
20 157.68 temperature 20 10 > th dose dependent rect. 9 21
26 158.17 temperature 15 10 > th dose dependent rect. 7 23
47 159.85 humidity 60 43200 > th dose independent rect. 15 2
63 160.51 wind 5 43200 > th dose independent rect. 5 9
66 160.54 wind 5 43200 > th dose independent rect. 7 7
68 160.56 humidity 60 43200 < th dose independent rect. 15 2
70 160.65 wind 5 43200 < th dose independent rect. 5 9
72 160.70 wind 5 43200 < th dose independent rect. 7 7
77 160.76 wind 5 43200 > th dose independent rect. 9 3
81 160.84 wind 5 43200 < th dose independent rect. 9 3
84 160.86 wind 5 43200 < th dose independent rect. 8 5
87 160.90 humidity 60 43200 < th dose independent rect. 14 6
107 161.12 radiation 1 14400 < th dose independent rect. 17 1
135 161.40 temperature 30 90 < th dose dependent rect. 5 16
136 161.43 radiation 1 14400 < th dose independent rect. 17 18
145 161.53 radiation 1 14400 > th dose independent rect. 17 1
148 161.55 radiation 20 14400 < th dose independent rect. 22 8
158 161.62 radiation 30 4320 > th dose dependent rect. 15 17
163 161.70 wind 5 43200 < th dose independent rect. 5 1
177 161.83 wind 5 43200 > th dose independent sin 3 NA
179 161.84 temperature 20 43200 > th dose independent rect. 19 1
183 161.88 radiation 1 14400 > th dose independent rect. 17 18
187 161.90 wind 5 43200 < th dose independent sin 4 NA
216 162.13 wind 5 43200 > th dose independent rect. 5 1
217 162.13 radiation 1 14400 < th dose independent rect. 17 13
238 162.25 radiation 40 4320 < th dose dependent rect. 18 5
251 162.41 wind 9 43200 < th dose independent rect. 19 11
253 162.42 wind 5 43200 > th dose independent rect. 17 21
254 162.43 radiation 1 14400 < th dose independent sin 11 NA
255 162.44 temperature 20 43200 < th dose independent rect. 19 1
256 162.44 radiation 20 4320 < th dose independent rect. 16 17
270 162.48 wind 5 43200 > th dose independent rect. 20 19
279 162.54 radiation 1 14400 > th dose independent rect. 17 13
287 162.56 radiation 1 14400 < th dose independent rect. 17 5
290 162.56 humidity 80 43200 > th dose dependent rect. 9 1
294 162.57 wind 5 43200 < th dose independent rect. 20 19
295 162.57 wind 5 43200 < th dose independent rect. 17 21
296 162.57 temperature 30 270 < th dose dependent rect. 1 20
303 162.60 humidity 90 43200 > th dose dependent rect. 19 1
304 162.60 wind 3 43200 > th dose dependent rect. 10 2
322 162.65 wind 3 43200 > th dose dependent rect. 8 5
329 162.67 wind 3 43200 > th dose dependent rect. 7 7
346 162.75 humidity 90 43200 < th dose independent rect. 7 15
347 162.75 humidity 90 43200 < th dose independent rect. 5 17
352 162.76 radiation 1 14400 < th dose independent rect. 5 6
359 162.78 temperature 30 270 < th dose dependent rect. 11 21
372 162.82 radiation 1 14400 > th dose independent sin 10 NA
378 162.83 temperature 30 43200 < th dose dependent rect. 20 1
379 162.84 radiation 1 14400 > th dose independent rect. 5 6
380 162.84 wind 9 43200 > th dose independent rect. 19 11
383 162.85 wind 3 43200 > th dose dependent rect. 5 9
387 162.86 temperature 10 43200 > th dose dependent rect. 20 1
402 162.88 radiation 1 14400 < th dose independent rect. 7 23
440 162.94 radiation 1 14400 < th dose independent rect. 7 11
486 163.01 radiation 1 14400 < th dose independent rect. 5 13
500 163.03 wind 5 43200 > th dose dependent rect. 19 20
506 163.05 humidity 90 43200 < th dose independent rect. 15 6
522 163.07 radiation 1 14400 < th dose independent rect. 5 16
552 163.10 humidity 90 43200 > th dose independent rect. 8 2
555 163.10 humidity 90 43200 < th dose independent rect. 11 12
571 163.12 radiation 1 14400 < th dose independent rect. 19 16
589 163.13 radiation 1 14400 < th dose dependent rect. 17 1
616 163.15 wind 5 43200 > th dose dependent rect. 17 21
618 163.16 humidity 90 43200 < th dose independent sin 22 NA
629 163.16 radiation 1 14400 < th dose independent rect. 20 22
708 163.19 radiation 1 14400 < th dose independent no NA NA
709 163.19 humidity 90 43200 < th dose independent rect. 8 2
741 163.20 radiation 1 14400 < th dose dependent rect. 5 1
742 163.20 humidity 80 43200 > th dose dependent rect. 17 4
744 163.21 temperature 20 43200 > th dose independent rect. 12 10
750 163.21 radiation 1 14400 < th dose independent rect. 7 14
776 163.22 radiation 1 14400 < th dose dependent rect. 5 5
823 163.25 radiation 1 14400 > th dose independent rect. 5 13
862 163.27 humidity 70 14400 < th dose independent rect. 19 2
870 163.27 radiation 1 14400 > th dose independent rect. 7 23
917 163.31 humidity 60 43200 > th dose independent sin 16 NA
952 163.32 wind 9 43200 > th dose dependent rect. 19 11