FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0343500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0349) R2 : 0.0289
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.271 (0.0735) R2dN8 : 0.0373 R2N8 : 0.0289
σ : 0.657
deviance : 198.34
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
186.58 0.642 2.94 -0.112 0.453 -0.208 -0.987 0.874 0.25 8.79 12.1 10 -- --
188.85 0.645 2.95 -0.097 0.458 -0.209 -0.256 -- 0.255 8.74 12.79 7 -- --
188.17 0.644 2.94 -0.119 0.476 -0.242 -- 0.397 0.256 9.08 12.85 14 -- --
189.01 0.645 2.95 -0.102 0.473 -0.234 -- -- 0.256 9.07 12.79 7 -- --
196.88 0.657 2.96 -0.143 -- -0.0339 -- 0.43 0.254 -- 18.38 12 -- --
190.34 0.647 2.95 -0.119 0.354 -- -0.664 -- 0.249 6.87 -- -- -- --
191.35 0.648 2.95 -0.129 0.352 -- -- -- 0.251 7.34 -- -- -- --
197.79 0.658 2.96 -0.12 -- -0.0405 -- -- 0.254 -- 15.31 8 -- --
189.28 0.644 2.94 -- 0.478 -0.241 -- -- 0.268 9.12 12.79 7 -- --
197.95 0.657 2.96 -0.123 -- -- -- -- 0.257 -- -- -- -- --
191.79 0.648 2.95 -- 0.351 -- -- -- 0.265 7.36 -- -- -- --
196.5 0.655 2.96 -- -- 0.127 -- -- 0.268 -- 4.6 7 -- --
198.34 0.657 2.96 -- -- -- -- -- 0.271 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 177.77 radiation 10.0 10 < th dose independent rect. 11 1
2 178.10 humidity 60.0 90 < th dose dependent rect. 9 1
17 178.32 humidity 60.0 90 < th dose independent rect. 8 2
34 178.92 radiation 20.0 10 < th dose dependent rect. 12 1
37 179.14 humidity 80.0 30 < th dose independent rect. 1 4
41 179.41 humidity 80.0 30 < th dose dependent rect. 1 4
45 179.63 radiation 40.0 10 > th dose dependent rect. 14 20
46 179.75 radiation 40.0 10 > th dose dependent rect. 9 1
143 180.85 humidity 80.0 30 < th dose independent rect. 1 1
146 180.85 humidity 80.0 30 < th dose dependent rect. 1 1
160 181.17 atmosphere 1005.0 30 > th dose dependent rect. 1 6
162 181.29 wind 1.0 90 < th dose dependent rect. 9 2
163 181.30 temperature 30.0 10 < th dose dependent rect. 6 1
167 181.35 wind 1.0 10 < th dose independent rect. 6 4
169 181.39 temperature 25.0 30 < th dose independent rect. 2 1
173 181.43 wind 3.0 30 < th dose independent rect. 2 1
174 181.43 radiation 40.0 30 > th dose independent rect. 14 20
177 181.49 temperature 30.0 30 < th dose dependent rect. 2 1
178 181.51 radiation 40.0 30 > th dose independent rect. 9 1
199 181.52 atmosphere 1005.0 30 > th dose independent rect. 2 1
203 181.61 temperature 10.0 30 > th dose independent rect. 2 1
206 181.61 humidity 50.0 30 > th dose independent rect. 2 1
209 181.61 atmosphere 995.0 30 > th dose independent rect. 2 1
210 181.61 atmosphere 1010.0 30 < th dose independent rect. 2 1
212 181.61 radiation 1.0 30 < th dose independent rect. 2 1
217 181.61 precipitation 0.1 30 < th dose independent rect. 2 1
218 181.61 temperature 10.0 30 > th dose independent rect. 3 23
219 181.61 radiation 1.0 30 < th dose dependent rect. 2 1
224 181.61 precipitation 0.1 30 < th dose dependent rect. 2 1
225 181.62 atmosphere 995.0 30 > th dose dependent rect. 2 1
285 181.69 wind 9.0 30 < th dose dependent rect. 2 1
290 181.73 humidity 80.0 30 > th dose dependent rect. 6 1
293 181.76 wind 1.0 10 < th dose independent rect. 6 10
301 181.77 temperature 10.0 30 > th dose dependent rect. 2 1
302 181.79 atmosphere 1015.0 30 < th dose dependent rect. 2 1
304 181.81 humidity 50.0 30 > th dose dependent rect. 2 1
307 181.83 humidity 60.0 1440 > th dose independent rect. 8 1
316 181.94 wind 1.0 30 > th dose independent rect. 2 1
317 181.95 radiation 10.0 10 < th dose dependent rect. 6 1
340 182.05 atmosphere 1005.0 10 > th dose dependent rect. 6 1
345 182.12 wind 3.0 30 < th dose dependent rect. 6 1
350 182.16 radiation 40.0 10 > th dose dependent sin 11 NA
383 182.36 wind 9.0 30 < th dose independent rect. 3 23
419 182.43 radiation 10.0 10 > th dose independent rect. 6 1
446 182.43 humidity 60.0 4320 < th dose dependent rect. 8 1
447 182.43 radiation 10.0 10 > th dose dependent rect. 6 1
541 182.56 humidity 60.0 4320 < th dose independent rect. 8 1
601 182.63 humidity 60.0 1440 > th dose independent rect. 23 10
658 182.66 wind 1.0 10 < th dose dependent rect. 9 1
679 182.76 wind 3.0 30 < th dose independent rect. 6 1
697 182.81 humidity 60.0 1440 > th dose independent rect. 4 5
701 182.85 atmosphere 1000.0 10 > th dose independent rect. 6 1
718 182.87 wind 1.0 10 < th dose independent rect. 9 1
725 182.89 radiation 1.0 10 < th dose independent rect. 7 5
727 182.89 radiation 1.0 10 < th dose dependent rect. 7 5
732 182.90 temperature 10.0 10 > th dose independent rect. 6 1
734 182.90 temperature 30.0 10 < th dose independent rect. 6 1
735 182.90 humidity 50.0 10 > th dose independent rect. 6 1
739 182.90 atmosphere 1015.0 10 < th dose independent rect. 6 1
740 182.90 radiation 20.0 10 < th dose independent rect. 6 1
743 182.90 precipitation 0.1 10 < th dose independent rect. 6 1
744 182.90 temperature 10.0 10 > th dose independent rect. 7 23
745 182.90 precipitation 0.1 10 < th dose dependent rect. 6 1
746 182.91 radiation 40.0 10 > th dose independent sin 11 NA
785 182.95 humidity 60.0 30 < th dose dependent rect. 16 18
794 182.99 humidity 60.0 1440 > th dose independent rect. 21 12
796 183.00 wind 9.0 30 < th dose independent rect. 7 23
803 183.03 wind 1.0 10 > th dose independent rect. 6 1
812 183.06 atmosphere 995.0 10 > th dose independent rect. 7 23
832 183.14 humidity 60.0 30 < th dose independent rect. 16 18
835 183.14 wind 1.0 10 < th dose dependent rect. 8 8
933 183.26 atmosphere 1005.0 30 > th dose dependent rect. 1 9
955 183.37 wind 9.0 1440 < th dose independent rect. 7 1
956 183.37 temperature 10.0 1440 > th dose independent rect. 7 1
960 183.37 temperature 30.0 1440 < th dose independent rect. 7 1
969 183.37 atmosphere 995.0 1440 > th dose independent rect. 7 1
970 183.37 atmosphere 1015.0 1440 < th dose independent rect. 7 1
972 183.37 temperature 10.0 1440 > th dose independent rect. 8 23
978 183.41 temperature 25.0 10 > th dose independent rect. 6 1
981 183.42 humidity 90.0 30 < th dose independent rect. 6 1