BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0508200 Os07g0508200|AK069914
(356 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0508200 Conserved hypothetical protein 452 e-127
Os03g0818000 Conserved hypothetical protein 100 2e-21
Os08g0430100 Conserved hypothetical protein 100 2e-21
Os04g0479100 Conserved hypothetical protein 92 6e-19
>Os07g0508200 Conserved hypothetical protein
Length = 356
Score = 452 bits (1162), Expect = e-127, Method: Compositional matrix adjust.
Identities = 243/313 (77%), Positives = 243/313 (77%)
Query: 44 DDFREXXXXXXXXRLDDFREXXXXXXXXXXXXXDEFGEPPRXXXXXXXXXXXXXXXXXXX 103
DDFRE RLDDFRE DEFGEPPR
Sbjct: 44 DDFREPPLLPPHHRLDDFREPHHLPPPHHHHHLDEFGEPPRHHVFAGHGGGAGPPPAPHV 103
Query: 104 XXXLEERLGAEIEEAHVLLGQNQRLAATHVALVQEVSAVRHELGRTARGLAAAQEEGELR 163
LEERLGAEIEEAHVLLGQNQRLAATHVALVQEVSAVRHELGRTARGLAAAQEEGELR
Sbjct: 104 VAALEERLGAEIEEAHVLLGQNQRLAATHVALVQEVSAVRHELGRTARGLAAAQEEGELR 163
Query: 164 LREVYERSMKMEAELRAVEEMRAELAQVRLDIQKLGAARQELMGQVQGFTQDLARSAVDL 223
LREVYERSMKMEAELRAVEEMRAELAQVRLDIQKLGAARQELMGQVQGFTQDLARSAVDL
Sbjct: 164 LREVYERSMKMEAELRAVEEMRAELAQVRLDIQKLGAARQELMGQVQGFTQDLARSAVDL 223
Query: 224 QQVAALKAEIQEIRHETQHLRSGIEVEKKGYAESYEQGQEMQKKLISVASEVEKLRAEAE 283
QQVAALKAEIQEIRHETQHLRSGIEVEKKGYAESYEQGQEMQKKLISVASEVEKLRAEAE
Sbjct: 224 QQVAALKAEIQEIRHETQHLRSGIEVEKKGYAESYEQGQEMQKKLISVASEVEKLRAEAE 283
Query: 284 KRSRAAVSXXXXXXXXXXXXXXXXXXXXXXXXXXXINQPHPQANTADSGSQFGPGSTHAP 343
KRSRAAVS INQPHPQANTADSGSQFGPGSTHAP
Sbjct: 284 KRSRAAVSGGNQVYVGGYGNPKAAYAANPYNAGYNINQPHPQANTADSGSQFGPGSTHAP 343
Query: 344 WGAYDMQRATGRR 356
WGAYDMQRATGRR
Sbjct: 344 WGAYDMQRATGRR 356
>Os03g0818000 Conserved hypothetical protein
Length = 345
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 115/188 (61%), Gaps = 3/188 (1%)
Query: 107 LEERLGAEIEEAHVLLGQNQRLAATHVALVQEVSAVRHELGRTARGLAAAQEEGELRLRE 166
LE+RL + LL NQR AATHVAL Q++ A +HEL + A+ E E +R
Sbjct: 59 LEDRLAVRDRDIQELLVDNQRFAATHVALQQQLIAAQHELRVVSIAATRARAEREDEVRA 118
Query: 167 VYERSMKMEAELRAVEEMRAELAQVRLDIQKLGAARQELMGQVQGFTQDLARSAVDLQQV 226
+ E++ ++EAE RA RAE+ QV D+Q L AR EL+ ++Q LAR + +
Sbjct: 119 LAEQAARIEAEARAAVAARAEVDQVHADVQVLAGARTELVDRLQDLRGQLARFQAEAGKT 178
Query: 227 AALKAEIQEIRHETQHLRSGIEVEKKGYAESYEQGQEMQKKLISVASEVEKLR---AEAE 283
+++A+++ +R E Q R+ +E EKK +A++ EQ + M+K +I+VASE+EKLR A AE
Sbjct: 179 ESVRAQVETMRREIQKGRAAVEFEKKAHADNLEQSKAMEKNMIAVASEIEKLRGDLANAE 238
Query: 284 KRSRAAVS 291
KR+ A +
Sbjct: 239 KRATAVTA 246
>Os08g0430100 Conserved hypothetical protein
Length = 268
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 106/185 (57%)
Query: 107 LEERLGAEIEEAHVLLGQNQRLAATHVALVQEVSAVRHELGRTARGLAAAQEEGELRLRE 166
LEE L + E + NQRLA V L Q + ++ +L ++ + + E EL RE
Sbjct: 37 LEEELSSRRAEMRRIHDDNQRLADEIVGLRQAMPRLKEDLHAASQAIPKLRAEKELESRE 96
Query: 167 VYERSMKMEAELRAVEEMRAELAQVRLDIQKLGAARQELMGQVQGFTQDLARSAVDLQQV 226
+ +R++K+EAELR++E +R + Q+R + KL + RQE+ +VQG ++L + Q++
Sbjct: 97 LTQRNLKLEAELRSLEPLRQDALQLRSEAGKLQSIRQEMTAKVQGLLKELEHQNSENQKI 156
Query: 227 AALKAEIQEIRHETQHLRSGIEVEKKGYAESYEQGQEMQKKLISVASEVEKLRAEAEKRS 286
+ AE +R E +R +E EKK + Q Q M+K L+S+A E EKLRAE +KR+
Sbjct: 157 PVMIAERDALRQELVRMRGTLEYEKKARPDLTAQVQAMEKDLVSMAQESEKLRAEIKKRN 216
Query: 287 RAAVS 291
+ S
Sbjct: 217 APSFS 221
>Os04g0479100 Conserved hypothetical protein
Length = 406
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 106/182 (58%), Gaps = 3/182 (1%)
Query: 107 LEERLGAEIEEAHVLLGQNQRLAATHVALVQEVSAVRHELGRTARGLAAAQEEGELRLRE 166
LE++L + EA L+ +NQRLA++HV L Q++ E+ L Q E ++ +R+
Sbjct: 42 LEKKLAEQTAEAEKLIRENQRLASSHVVLRQDIVDTEKEMQMIRAHLGDVQTETDMHMRD 101
Query: 167 VYERSMKMEAELRAVEEMRAELAQVRLDIQKLGAARQELMGQVQGFTQDLARSAVDLQQV 226
+ ER MEA+++A + ++ EL QV ++ ++L A RQ L ++ T++L + + D +++
Sbjct: 102 LMERMRLMEADIQAGDAVKKELHQVHMEAKRLIAERQMLTVEMDKVTKELHKFSGDSKKL 161
Query: 227 AALKAEIQEIRHETQHLRSGIEVEKKGYAESYEQGQEMQKKLISVASEVEKLRAE---AE 283
L E+ +R E Q LRS E EK + EQ + M+ L+++ E +KLRA+ AE
Sbjct: 162 PELLTELDGLRKEHQSLRSAFEYEKNTNIKQVEQMRTMEMNLMTMTKEADKLRADVANAE 221
Query: 284 KR 285
KR
Sbjct: 222 KR 223
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.128 0.342
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,968,105
Number of extensions: 211708
Number of successful extensions: 1167
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1162
Number of HSP's successfully gapped: 4
Length of query: 356
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 254
Effective length of database: 11,709,973
Effective search space: 2974333142
Effective search space used: 2974333142
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)