Os04g0479100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0479100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10.13 | 0.15 | 10.8 | 0.819 | 0.378 | -0.248 | -0.147 | -1.93 | 0.143 | 4.19 | 0.7593 | 4325 | -- | -- |
| 11.75 | 0.16 | 10.9 | 0.435 | 0.393 | -0.179 | -0.204 | -- | -0.00405 | 4.16 | 21.8 | 20173 | -- | -- |
| 10.17 | 0.149 | 10.8 | 0.82 | 0.377 | -0.259 | -- | -1.99 | 0.143 | 4.16 | 0.6579 | 4343 | -- | -- |
| 11.68 | 0.159 | 10.9 | 0.449 | 0.386 | -0.191 | -- | -- | -0.00414 | 4.35 | 19.24 | 21484 | -- | -- |
| 17.79 | 0.196 | 10.8 | 0.828 | -- | -0.271 | -- | -1.97 | 0.142 | -- | 0.72 | 4302 | -- | -- |
| 13.37 | 0.171 | 10.8 | 0.43 | 0.389 | -- | -0.123 | -- | 0.0701 | 4.17 | -- | -- | -- | -- |
| 13.41 | 0.171 | 10.8 | 0.432 | 0.388 | -- | -- | -- | 0.0708 | 4.19 | -- | -- | -- | -- |
| 13.37 | 0.17 | 10.9 | 0.459 | -- | 0.419 | -- | -- | 0.0514 | -- | 1.594e-07 | 530 | -- | -- |
| 16.91 | 0.192 | 10.9 | -- | 0.396 | -0.19 | -- | -- | -0.0492 | 4.18 | 22.32 | 19030 | -- | -- |
| 21.56 | 0.217 | 10.8 | 0.447 | -- | -- | -- | -- | 0.0811 | -- | -- | -- | -- | -- |
| 18.32 | 0.2 | 10.8 | -- | 0.396 | -- | -- | -- | 0.0227 | 4.17 | -- | -- | -- | -- |
| 18.83 | 0.202 | 10.9 | -- | -- | 0.449 | -- | -- | 0.0192 | -- | 0.38 | 574 | -- | -- |
| 26.83 | 0.242 | 10.8 | -- | -- | -- | -- | -- | 0.0315 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 9.85 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 9 |
| 16 | 9.96 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 7 | NA |
| 35 | 10.02 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 12 |
| 39 | 10.02 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 23 |
| 73 | 10.08 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 15 | 19 |
| 77 | 10.09 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 16 |
| 86 | 10.11 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 5 | 12 |
| 90 | 10.11 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 22 | 19 |
| 97 | 10.12 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 24 | 17 |
| 122 | 10.15 | radiation | 1.0 | 4320 | < th | dose dependent | sin | 2 | NA |
| 148 | 10.18 | radiation | 1.0 | 4320 | < th | dose dependent | no | NA | NA |
| 149 | 10.18 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 222 | 10.20 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 7 |
| 253 | 10.22 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 254 | 10.22 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 256 | 10.22 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 257 | 10.22 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 276 | 10.22 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 9 | 23 |
| 289 | 10.24 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 291 | 10.24 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 295 | 10.24 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 24 | 10 |
| 307 | 10.25 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 314 | 10.25 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 11 |
| 317 | 10.25 | radiation | 1.0 | 4320 | < th | dose dependent | sin | 12 | NA |
| 345 | 10.27 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 6 | 13 |
| 352 | 10.27 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 15 | 19 |
| 357 | 10.27 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 388 | 10.29 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 390 | 10.29 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 407 | 10.29 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 414 | 10.29 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 7 | 13 |
| 429 | 10.30 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 480 | 10.31 | temperature | 25.0 | 43200 | < th | dose dependent | sin | 21 | NA |
| 504 | 10.31 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 23 | 11 |
| 533 | 10.32 | humidity | 90.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 543 | 10.32 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 23 |
| 544 | 10.32 | temperature | 25.0 | 43200 | < th | dose dependent | sin | 19 | NA |
| 550 | 10.32 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 565 | 10.32 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 1 | 9 |
| 596 | 10.33 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 604 | 10.33 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 607 | 10.33 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 613 | 10.33 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 5 | 5 |
| 668 | 10.34 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 15 | 20 |
| 737 | 10.35 | radiation | 1.0 | 4320 | > th | dose independent | sin | 1 | NA |
| 747 | 10.35 | temperature | 25.0 | 43200 | < th | dose dependent | no | NA | NA |
| 801 | 10.35 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 14 | 23 |
| 812 | 10.36 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 5 | 12 |
| 844 | 10.36 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 7 |
| 885 | 10.36 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 15 | 20 |
| 901 | 10.36 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 12 | 22 |
| 950 | 10.37 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 986 | 10.37 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 17 | 18 |