Os07g0508200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0508200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.99 | 0.205 | 11.5 | 0.892 | 0.471 | 0.142 | 0.126 | -3.24 | 0.218 | 4.93 | 30 | 877 | -- | -- |
| 20.08 | 0.209 | 11.6 | 0.479 | 0.507 | -0.205 | 0.151 | -- | 0.179 | 4.92 | 32.94 | 762 | -- | -- |
| 19.02 | 0.203 | 11.5 | 0.892 | 0.469 | 0.143 | -- | -3.18 | 0.216 | 4.9 | 30 | 893 | -- | -- |
| 20.06 | 0.209 | 11.6 | 0.5 | 0.478 | -0.196 | -- | -- | 0.195 | 5.15 | 30.6 | 887 | -- | -- |
| 29.1 | 0.251 | 11.5 | 1.07 | -- | 0.155 | -- | -3.1 | 0.243 | -- | 30 | 1278 | -- | -- |
| 21.2 | 0.216 | 11.6 | 0.495 | 0.46 | -- | 0.0428 | -- | 0.163 | 4.66 | -- | -- | -- | -- |
| 21.21 | 0.216 | 11.6 | 0.495 | 0.46 | -- | -- | -- | 0.163 | 4.66 | -- | -- | -- | -- |
| 30.48 | 0.257 | 11.6 | 0.538 | -- | -0.194 | -- | -- | 0.221 | -- | 30.5 | 5503 | -- | -- |
| 24.67 | 0.231 | 11.6 | -- | 0.473 | -0.255 | -- | -- | 0.129 | 4.91 | 30 | 2419 | -- | -- |
| 32.46 | 0.266 | 11.6 | 0.512 | -- | -- | -- | -- | 0.175 | -- | -- | -- | -- | -- |
| 27.66 | 0.246 | 11.6 | -- | 0.469 | -- | -- | -- | 0.107 | 4.63 | -- | -- | -- | -- |
| 31.58 | 0.262 | 11.6 | -- | -- | -0.409 | -- | -- | -0.0252 | -- | 22.08 | 47520 | -- | -- |
| 39.39 | 0.293 | 11.6 | -- | -- | -- | -- | -- | 0.118 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.32 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 2 | 18.56 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 3 | 18.67 | humidity | 60 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 4 | 18.71 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 7 | 18.73 | temperature | 25 | 4320 | > th | dose dependent | rect. | 2 | 5 |
| 10 | 18.77 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 3 |
| 11 | 18.79 | humidity | 60 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 12 | 18.80 | humidity | 70 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 26 | 18.85 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 22 | 12 |
| 28 | 18.87 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 32 | 18.90 | humidity | 70 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 49 | 18.95 | atmosphere | 1000 | 90 | > th | dose dependent | rect. | 22 | 1 |
| 57 | 18.97 | humidity | 70 | 14400 | > th | dose independent | sin | 10 | NA |
| 61 | 18.97 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 64 | 18.98 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 72 | 18.98 | humidity | 80 | 14400 | < th | dose dependent | rect. | 17 | 17 |
| 77 | 18.99 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 17 |
| 79 | 18.99 | humidity | 70 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 90 | 19.00 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 21 |
| 91 | 19.00 | temperature | 25 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 100 | 19.01 | humidity | 70 | 14400 | > th | dose independent | sin | 7 | NA |
| 103 | 19.01 | humidity | 70 | 14400 | < th | dose independent | sin | 4 | NA |
| 107 | 19.01 | humidity | 70 | 14400 | < th | dose independent | rect. | 20 | 19 |
| 113 | 19.01 | humidity | 70 | 14400 | < th | dose independent | rect. | 14 | 21 |
| 119 | 19.01 | humidity | 80 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 127 | 19.02 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 130 | 19.02 | humidity | 70 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 141 | 19.02 | temperature | 25 | 30 | > th | dose dependent | rect. | 18 | 14 |
| 147 | 19.03 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 5 |
| 192 | 19.04 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 3 |
| 216 | 19.04 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 11 | 18 |
| 226 | 19.05 | temperature | 30 | 720 | > th | dose independent | rect. | 15 | 2 |
| 285 | 19.06 | humidity | 70 | 14400 | > th | dose independent | no | NA | NA |
| 288 | 19.06 | humidity | 70 | 14400 | < th | dose independent | no | NA | NA |
| 331 | 19.06 | humidity | 70 | 14400 | < th | dose independent | rect. | 8 | 13 |
| 334 | 19.06 | humidity | 70 | 14400 | > th | dose independent | rect. | 7 | 14 |
| 365 | 19.06 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 17 |
| 467 | 19.06 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 23 |
| 496 | 19.06 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 14 | 10 |
| 497 | 19.06 | atmosphere | 1000 | 90 | > th | dose dependent | rect. | 17 | 10 |
| 503 | 19.07 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 22 | 1 |
| 521 | 19.07 | humidity | 70 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 574 | 19.07 | humidity | 70 | 14400 | > th | dose independent | rect. | 20 | 23 |
| 578 | 19.07 | humidity | 80 | 14400 | < th | dose dependent | no | NA | NA |
| 587 | 19.07 | humidity | 80 | 14400 | < th | dose dependent | rect. | 7 | 22 |
| 591 | 19.07 | humidity | 80 | 14400 | < th | dose dependent | rect. | 12 | 23 |
| 597 | 19.08 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 612 | 19.08 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 22 | 12 |
| 641 | 19.08 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 21 | 14 |
| 642 | 19.08 | humidity | 80 | 14400 | < th | dose dependent | rect. | 7 | 18 |
| 643 | 19.08 | humidity | 80 | 14400 | < th | dose dependent | rect. | 5 | 19 |
| 648 | 19.08 | humidity | 80 | 14400 | < th | dose dependent | rect. | 3 | 20 |
| 654 | 19.08 | humidity | 80 | 14400 | < th | dose dependent | rect. | 1 | 21 |
| 671 | 19.08 | humidity | 80 | 14400 | < th | dose dependent | rect. | 23 | 22 |
| 686 | 19.09 | temperature | 30 | 720 | > th | dose independent | sin | 17 | NA |
| 759 | 19.09 | humidity | 80 | 14400 | < th | dose dependent | sin | 12 | NA |
| 766 | 19.09 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 15 | 14 |
| 767 | 19.09 | humidity | 80 | 14400 | < th | dose dependent | rect. | 8 | 15 |
| 768 | 19.09 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 769 | 19.09 | humidity | 80 | 14400 | < th | dose dependent | rect. | 6 | 16 |
| 777 | 19.09 | humidity | 80 | 14400 | < th | dose dependent | rect. | 3 | 18 |
| 802 | 19.10 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 3 |
| 846 | 19.10 | humidity | 80 | 14400 | < th | dose dependent | rect. | 9 | 5 |
| 855 | 19.10 | humidity | 80 | 14400 | < th | dose dependent | rect. | 23 | 15 |
| 882 | 19.11 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 15 | 9 |
| 912 | 19.11 | humidity | 80 | 14400 | < th | dose dependent | rect. | 1 | 13 |
| 959 | 19.12 | humidity | 80 | 14400 | < th | dose dependent | sin | 0 | NA |
| 974 | 19.12 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 10 |