BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0508200 Os07g0508200|AK069914
(356 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G14750.1 | chr3:4953765-4955373 REVERSE LENGTH=332 168 4e-42
AT1G55170.1 | chr1:20580578-20581706 FORWARD LENGTH=284 107 8e-24
AT1G67170.1 | chr1:25127727-25129145 FORWARD LENGTH=360 107 9e-24
AT2G30120.2 | chr2:12860607-12861862 REVERSE LENGTH=289 103 2e-22
AT5G61920.1 | chr5:24864830-24865628 FORWARD LENGTH=239 69 5e-12
>AT3G14750.1 | chr3:4953765-4955373 REVERSE LENGTH=332
Length = 331
Score = 168 bits (425), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 88/175 (50%), Positives = 122/175 (69%)
Query: 107 LEERLGAEIEEAHVLLGQNQRLAATHVALVQEVSAVRHELGRTARGLAAAQEEGELRLRE 166
LE+RL A+ ++ LL NQRLAATHVAL QE+ +HEL R + + + E E+ +RE
Sbjct: 70 LEDRLAAQNQDVQGLLADNQRLAATHVALKQELEVAQHELQRIMHYIDSLRAEEEIMMRE 129
Query: 167 VYERSMKMEAELRAVEEMRAELAQVRLDIQKLGAARQELMGQVQGFTQDLARSAVDLQQV 226
+Y++SM+ E ELR V+ MRAE+ ++R DI++ + RQEL QV TQDLAR DLQQ+
Sbjct: 130 MYDKSMRSEMELREVDAMRAEIQKIRADIKEFTSGRQELTSQVHLMTQDLARLTADLQQI 189
Query: 227 AALKAEIQEIRHETQHLRSGIEVEKKGYAESYEQGQEMQKKLISVASEVEKLRAE 281
L AEI+ + E Q R+ I+ EKKGYAE+YE G+ M+ KL+++A E+EKLRAE
Sbjct: 190 PTLTAEIENTKQELQRARAAIDYEKKGYAENYEHGKIMEHKLVAMARELEKLRAE 244
>AT1G55170.1 | chr1:20580578-20581706 FORWARD LENGTH=284
Length = 283
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 100/161 (62%)
Query: 121 LLGQNQRLAATHVALVQEVSAVRHELGRTARGLAAAQEEGELRLREVYERSMKMEAELRA 180
LL N LA + L +E+ A + EL R ++ + E +L+LRE E+ K+E ++RA
Sbjct: 62 LLSDNHGLADDRMVLERELVAAKEELHRMNLMISDLRAEQDLQLREFSEKRHKLEGDVRA 121
Query: 181 VEEMRAELAQVRLDIQKLGAARQELMGQVQGFTQDLARSAVDLQQVAALKAEIQEIRHET 240
+E + E +Q+R ++QKL ++EL G VQ +DLA+ D +Q+ ++AE+++++ E
Sbjct: 122 MESYKKEASQLRGEVQKLDEIKRELSGNVQLLRKDLAKLQSDNKQIPGMRAEVKDLQKEL 181
Query: 241 QHLRSGIEVEKKGYAESYEQGQEMQKKLISVASEVEKLRAE 281
H R IE EKK E EQ Q M+K ++S+A EVEKLRAE
Sbjct: 182 MHARDAIEYEKKEKFELMEQRQTMEKNMVSMAREVEKLRAE 222
>AT1G67170.1 | chr1:25127727-25129145 FORWARD LENGTH=360
Length = 359
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 106/175 (60%)
Query: 107 LEERLGAEIEEAHVLLGQNQRLAATHVALVQEVSAVRHELGRTARGLAAAQEEGELRLRE 166
+E++ A+ E L +NQRL TH +L QE++A +HE+ + + + E E R+
Sbjct: 58 MEQKFVAQHGELQRLAIENQRLGGTHGSLRQELAAAQHEIQMLHAQIGSMKSEREQRMMG 117
Query: 167 VYERSMKMEAELRAVEEMRAELAQVRLDIQKLGAARQELMGQVQGFTQDLARSAVDLQQV 226
+ E+ KME EL+ E ++ E+ Q R + + L AR+ELM +V TQ+L +S D+QQ+
Sbjct: 118 LAEKVAKMETELQKSEAVKLEMQQARAEARSLVVAREELMSKVHQLTQELQKSRSDVQQI 177
Query: 227 AALKAEIQEIRHETQHLRSGIEVEKKGYAESYEQGQEMQKKLISVASEVEKLRAE 281
AL +E++ +R E Q R+ + EKK Y + E Q M+K +++A EVEKL+A+
Sbjct: 178 PALMSELENLRQEYQQCRATYDYEKKFYNDHLESLQAMEKNYMTMAREVEKLQAQ 232
>AT2G30120.2 | chr2:12860607-12861862 REVERSE LENGTH=289
Length = 288
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 103/175 (58%)
Query: 107 LEERLGAEIEEAHVLLGQNQRLAATHVALVQEVSAVRHELGRTARGLAAAQEEGELRLRE 166
LE+R+ + E LL NQRLA H+ L +++ + EL R + EGE ++RE
Sbjct: 39 LEDRIAIQHREIQSLLNDNQRLAVAHIGLKDQLNVAKRELERLLETAVKVKAEGEAKVRE 98
Query: 167 VYERSMKMEAELRAVEEMRAELAQVRLDIQKLGAARQELMGQVQGFTQDLARSAVDLQQV 226
VY+ +++MEAE R ++ + AEL QVR D+Q+LG+ RQEL ++ F ++A++ + +
Sbjct: 99 VYQNALRMEAEARVIDGLGAELGQVRSDVQRLGSDRQELATELAMFDDEMAKAKPNSDRA 158
Query: 227 AALKAEIQEIRHETQHLRSGIEVEKKGYAESYEQGQEMQKKLISVASEVEKLRAE 281
+K EI+ +R E + R+ +E+EKK A + + M+K + + E+ KL E
Sbjct: 159 IEVKLEIEILRGEIRKGRAALELEKKTRASNLHHERGMEKTIDHLNREIVKLEEE 213
>AT5G61920.1 | chr5:24864830-24865628 FORWARD LENGTH=239
Length = 238
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 93/175 (53%)
Query: 107 LEERLGAEIEEAHVLLGQNQRLAATHVALVQEVSAVRHELGRTARGLAAAQEEGELRLRE 166
LE ++ + E L N++LA+++VAL ++++ E+ + + + E+++R
Sbjct: 53 LENKIAVQAAEIDRLSNDNRKLASSYVALKEDLTVADREVQGLRAHIRKTETDHEIQIRS 112
Query: 167 VYERSMKMEAELRAVEEMRAELAQVRLDIQKLGAARQELMGQVQGFTQDLARSAVDLQQV 226
E+ KME ++ E +R E+ ++ +L R+EL +V+ +DL + ++ + +
Sbjct: 113 TLEKIAKMEGMVKNRENIRREVQSAHIEAHRLAREREELASKVKLGMKDLKKVCLEAESL 172
Query: 227 AALKAEIQEIRHETQHLRSGIEVEKKGYAESYEQGQEMQKKLISVASEVEKLRAE 281
A E++ ++ E Q LR E EK G E Q + M++K+I +EKLR+E
Sbjct: 173 EASSQELERLKEEHQRLRKEFEEEKSGNVEKLAQLKGMERKIIGAVKAIEKLRSE 227
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.128 0.342
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,276,077
Number of extensions: 126273
Number of successful extensions: 773
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 783
Number of HSP's successfully gapped: 5
Length of query: 356
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 256
Effective length of database: 8,364,969
Effective search space: 2141432064
Effective search space used: 2141432064
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 112 (47.8 bits)