BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0480800 Os07g0480800|J065083K03
(81 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0480800 Similar to Cellulase (EC 3.2.1.4) 104 1e-23
Os10g0545500 Similar to Cellulase (EC 3.2.1.4) (Fragment) 64 2e-11
Os03g0108300 Similar to Cellulase (EC 3.2.1.4) 64 2e-11
>Os07g0480800 Similar to Cellulase (EC 3.2.1.4)
Length = 81
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/47 (100%), Positives = 47/47 (100%)
Query: 35 YYPSSVHRAMAFSRDYTNKWGPQHQTLSADQSSLTIWLDKTCGNLFH 81
YYPSSVHRAMAFSRDYTNKWGPQHQTLSADQSSLTIWLDKTCGNLFH
Sbjct: 35 YYPSSVHRAMAFSRDYTNKWGPQHQTLSADQSSLTIWLDKTCGNLFH 81
>Os10g0545500 Similar to Cellulase (EC 3.2.1.4) (Fragment)
Length = 306
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 35/46 (76%)
Query: 35 YYPSSVHRAMAFSRDYTNKWGPQHQTLSADQSSLTIWLDKTCGNLF 80
YYPS + R+MAF Y+ WGPQHQTLS DQ SLT+W+D++ G+ F
Sbjct: 38 YYPSKMFRSMAFYEGYSTLWGPQHQTLSQDQKSLTLWMDRSSGSGF 83
>Os03g0108300 Similar to Cellulase (EC 3.2.1.4)
Length = 310
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 35/46 (76%)
Query: 35 YYPSSVHRAMAFSRDYTNKWGPQHQTLSADQSSLTIWLDKTCGNLF 80
YYPS R+MAF Y N WG QHQTLSADQ++LT+W+D++ G+ F
Sbjct: 42 YYPSKTIRSMAFGEGYDNLWGGQHQTLSADQTALTVWMDRSSGSGF 87
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.129 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,561,175
Number of extensions: 33997
Number of successful extensions: 72
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 3
Length of query: 81
Length of database: 17,035,801
Length adjustment: 51
Effective length of query: 30
Effective length of database: 14,372,887
Effective search space: 431186610
Effective search space used: 431186610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)