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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0108300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cellulase (EC 3.2.1.4).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.0387) R2 : 0.129
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.76 (0.517) R2dE : 0.101 R2E : 0.0983
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.289 (0.0814) R2dN8 : 0.031 R2N8 : 0.0281
σ : 0.726
deviance : 243.19
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 20.24
memory length : 64
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.04
open length of G : 2.27

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
241.05 0.729 3.04 -0.134 0.153 3.9 0.0921 -1.68 -0.303 22.7 20.09 80 7 1.98
241.31 0.723 3.04 -0.136 0.153 3.88 0.118 -- -0.304 22.6 20.13 74 7.02 2.13
241.05 0.723 3.04 -0.14 0.154 3.93 -- -1.66 -0.303 22.7 20.1 77 6.99 2.05
241.36 0.724 3.04 -0.139 0.152 3.89 -- -- -0.306 22.8 20.12 73 7.02 2.13
242.47 0.725 3.03 -0.136 -- 3.85 -- -1.71 -0.303 -- 20.05 75 7 2.07
269.55 0.77 3.04 -0.191 0.108 -- 0.179 -- -0.335 23.6 -- -- -- --
269.64 0.769 3.04 -0.199 0.111 -- -- -- -0.337 0.675 -- -- -- --
242.77 0.726 3.03 -0.138 -- 3.81 -- -- -0.305 -- 20.14 74 6.96 2.19
241.88 0.724 3.03 -- 0.152 3.9 -- -- -0.289 22.8 20.17 70 7.02 2.19
270.41 0.768 3.04 -0.195 -- -- -- -- -0.335 -- -- -- -- --
270.68 0.77 3.04 -- 0.108 -- -- -- -0.315 0.588 -- -- -- --
243.19 0.726 3.03 -- -- 3.76 -- -- -0.289 -- 20.24 64 7.04 2.27
271.42 0.769 3.04 -- -- -- -- -- -0.313 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 242.06 temperature 20.0 90 < th dose independent rect. 7 2
3 242.94 temperature 20.0 90 < th dose dependent rect. 6 3
7 242.95 temperature 20.0 30 < th dose dependent rect. 7 1
16 246.76 wind 1.0 270 < th dose independent rect. 18 1
17 246.76 wind 1.0 270 < th dose dependent rect. 18 1
32 251.96 wind 3.0 90 > th dose dependent rect. 5 2
35 253.68 wind 3.0 270 < th dose independent rect. 16 4
43 254.68 wind 3.0 90 > th dose independent rect. 3 4
54 255.23 humidity 90.0 4320 > th dose dependent rect. 12 2
57 255.37 humidity 90.0 4320 > th dose dependent rect. 8 6
77 255.70 wind 3.0 10 < th dose dependent rect. 19 3
78 255.75 radiation 30.0 4320 < th dose independent rect. 23 8
105 256.34 temperature 20.0 10 < th dose dependent rect. 4 1
131 256.63 wind 9.0 90 > th dose independent rect. 14 2
133 256.63 wind 9.0 90 > th dose dependent rect. 14 2
137 256.69 wind 9.0 10 > th dose independent rect. 15 1
145 256.69 wind 9.0 10 > th dose dependent rect. 15 1
155 256.70 precipitation 0.1 4320 < th dose independent rect. 1 1
156 256.70 precipitation 0.1 4320 < th dose dependent rect. 1 1
158 256.73 precipitation 0.1 4320 > th dose independent rect. 1 1
159 256.73 precipitation 0.1 4320 > th dose dependent rect. 1 1
179 256.88 wind 1.0 90 > th dose dependent rect. 2 6
181 257.03 wind 5.0 10 > th dose independent rect. 8 1
184 257.03 wind 5.0 10 > th dose dependent rect. 8 1
191 257.05 wind 3.0 90 > th dose independent rect. 5 2
202 257.14 radiation 30.0 4320 < th dose independent rect. 21 10
208 257.30 radiation 1.0 30 < th dose dependent rect. 7 1
231 257.48 humidity 90.0 4320 > th dose dependent rect. 9 2
234 257.51 humidity 90.0 30 > th dose independent rect. 19 14
248 257.69 humidity 90.0 4320 > th dose independent rect. 8 6
262 257.85 precipitation 0.1 90 > th dose independent rect. 4 1
263 257.85 precipitation 0.1 10 > th dose independent rect. 4 2
267 257.85 precipitation 0.1 90 > th dose dependent rect. 4 1
268 257.85 precipitation 0.1 10 > th dose dependent rect. 4 2
400 258.21 humidity 90.0 4320 > th dose independent rect. 12 2
405 258.30 wind 3.0 10 > th dose independent rect. 6 1
406 258.31 atmosphere 995.0 4320 > th dose independent rect. 20 3
420 258.46 temperature 20.0 90 < th dose independent rect. 2 8
421 258.46 radiation 30.0 4320 < th dose independent rect. 19 12
433 258.55 humidity 90.0 90 < th dose independent rect. 19 14
442 258.61 humidity 90.0 30 > th dose independent sin 8 NA
472 258.81 atmosphere 995.0 14400 > th dose independent rect. 22 1
498 258.84 radiation 30.0 4320 < th dose independent rect. 17 14
527 258.95 humidity 90.0 4320 < th dose independent rect. 8 6
549 259.01 precipitation 0.1 4320 < th dose independent rect. 1 3
550 259.01 precipitation 0.1 4320 < th dose dependent rect. 1 3
554 259.05 humidity 80.0 30 > th dose dependent rect. 23 10
568 259.14 humidity 90.0 10 > th dose independent rect. 3 21
570 259.14 precipitation 0.1 4320 > th dose dependent rect. 1 3
589 259.21 precipitation 0.1 4320 > th dose independent rect. 1 3
592 259.22 humidity 90.0 4320 > th dose independent rect. 9 2
614 259.30 atmosphere 995.0 4320 > th dose independent rect. 3 6
637 259.37 atmosphere 995.0 4320 > th dose independent rect. 3 8
643 259.39 radiation 40.0 4320 > th dose independent rect. 7 1
660 259.39 radiation 40.0 4320 > th dose dependent rect. 7 1
682 259.42 radiation 30.0 4320 < th dose independent rect. 5 2
689 259.44 wind 9.0 90 > th dose independent rect. 14 5
691 259.45 temperature 20.0 4320 > th dose independent rect. 16 1
723 259.61 atmosphere 995.0 14400 > th dose independent rect. 3 1
758 259.74 temperature 20.0 4320 < th dose independent rect. 16 1
779 259.82 radiation 1.0 10 < th dose independent rect. 6 1
793 259.86 radiation 20.0 4320 > th dose dependent rect. 6 1
805 259.86 humidity 90.0 90 > th dose dependent rect. 19 13
819 259.92 atmosphere 995.0 14400 > th dose independent rect. 5 4
820 259.92 atmosphere 1000.0 1440 > th dose independent rect. 17 7
822 259.93 atmosphere 1000.0 1440 < th dose independent rect. 16 8
831 259.93 temperature 20.0 1440 < th dose dependent rect. 9 2
835 259.95 humidity 90.0 4320 < th dose independent rect. 9 2
839 259.96 temperature 20.0 720 < th dose dependent rect. 20 1
842 259.97 temperature 15.0 4320 > th dose independent rect. 9 4
867 260.02 wind 9.0 4320 < th dose independent rect. 23 4
904 260.09 temperature 20.0 90 < th dose independent rect. 2 1
970 260.20 wind 9.0 4320 < th dose independent rect. 22 2
988 260.22 atmosphere 995.0 14400 > th dose independent rect. 20 13
991 260.22 temperature 15.0 4320 < th dose dependent rect. 6 4
993 260.23 atmosphere 1000.0 1440 > th dose independent sin 15 NA