Os07g0480800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cellulase (EC 3.2.1.4).
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Os07g0480800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cellulase (EC 3.2.1.4).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 487.86 | 1.04 | 4.09 | -1.16 | 1.07 | -0.265 | -3.67 | -4.19 | -0.616 | 1.73 | 48.56 | 1206 | -- | -- |
| 503.01 | 1.04 | 4.12 | -1.44 | 1.03 | -0.363 | -3.27 | -- | -0.637 | 1.62 | 51.89 | 1359 | -- | -- |
| 532.71 | 1.07 | 4.1 | -1.09 | 1.11 | -0.201 | -- | -3.73 | -0.598 | 2.13 | 48.94 | 1625 | -- | -- |
| 545.46 | 1.09 | 4.1 | -1.44 | 1.09 | -0.335 | -- | -- | -0.634 | 1.94 | 51.78 | 1342 | -- | -- |
| 605.46 | 1.15 | 4.08 | -1.03 | -- | -0.183 | -- | -4.06 | -0.607 | -- | 48.9 | 1622 | -- | -- |
| 512.4 | 1.06 | 4.09 | -1.48 | 1.13 | -- | -3.28 | -- | -0.66 | 1.88 | -- | -- | -- | -- |
| 552.82 | 1.1 | 4.08 | -1.39 | 1.15 | -- | -- | -- | -0.643 | 2.37 | -- | -- | -- | -- |
| 589.91 | 1.14 | 4.06 | -1.34 | -- | 0.607 | -- | -- | -0.589 | -- | 2.055 | 4770 | -- | -- |
| 598.41 | 1.14 | 4.05 | -- | 1.07 | -0.308 | -- | -- | -0.508 | 2.41 | 51.8 | 1262 | -- | -- |
| 631.37 | 1.17 | 4.07 | -1.34 | -- | -- | -- | -- | -0.615 | -- | -- | -- | -- | -- |
| 603.44 | 1.15 | 4.04 | -- | 1.13 | -- | -- | -- | -0.489 | 2.35 | -- | -- | -- | -- |
| 637.12 | 1.18 | 4.03 | -- | -- | 0.607 | -- | -- | -0.441 | -- | 2.055 | 4770 | -- | -- |
| 678.53 | 1.22 | 4.04 | -- | -- | -- | -- | -- | -0.467 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 475.19 | humidity | 80 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 4 | 475.54 | humidity | 80 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 6 | 475.66 | humidity | 80 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 9 | 475.72 | humidity | 80 | 14400 | > th | dose independent | rect. | 1 | 4 |
| 11 | 475.76 | humidity | 80 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 12 | 475.77 | wind | 7 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 13 | 475.79 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 18 | 1 |
| 14 | 475.81 | humidity | 80 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 45 | 476.26 | wind | 7 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 57 | 476.48 | humidity | 80 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 74 | 476.80 | humidity | 80 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 94 | 477.21 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 7 |
| 108 | 477.61 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 109 | 477.62 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 120 | 478.16 | wind | 7 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 128 | 478.45 | humidity | 90 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 172 | 479.43 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 177 | 479.60 | humidity | 70 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 184 | 479.76 | wind | 7 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 190 | 479.96 | wind | 7 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 206 | 480.09 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 3 |
| 231 | 480.28 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 246 | 480.30 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 255 | 480.47 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 281 | 480.70 | humidity | 90 | 90 | > th | dose independent | rect. | 3 | 2 |
| 311 | 480.89 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 1 |
| 314 | 480.98 | wind | 3 | 270 | < th | dose independent | rect. | 18 | 1 |
| 334 | 481.24 | radiation | 40 | 720 | < th | dose independent | rect. | 12 | 16 |
| 340 | 481.31 | wind | 9 | 14400 | < th | dose independent | rect. | 4 | 10 |
| 351 | 481.42 | radiation | 20 | 720 | < th | dose independent | rect. | 12 | 16 |
| 370 | 481.74 | radiation | 20 | 720 | < th | dose independent | rect. | 12 | 8 |
| 389 | 482.02 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 15 |
| 420 | 482.45 | radiation | 20 | 720 | < th | dose independent | sin | 16 | NA |
| 423 | 482.46 | radiation | 30 | 720 | > th | dose independent | rect. | 12 | 1 |
| 447 | 482.62 | radiation | 20 | 720 | < th | dose independent | rect. | 14 | 14 |
| 451 | 482.69 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 459 | 482.78 | wind | 9 | 14400 | < th | dose independent | rect. | 20 | 18 |
| 467 | 482.95 | radiation | 40 | 720 | < th | dose dependent | rect. | 12 | 16 |
| 475 | 483.09 | humidity | 90 | 720 | < th | dose independent | rect. | 12 | 4 |
| 484 | 483.13 | radiation | 20 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 491 | 483.20 | radiation | 20 | 720 | < th | dose independent | rect. | 14 | 6 |
| 518 | 483.38 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 566 | 483.56 | wind | 9 | 14400 | < th | dose independent | sin | 6 | NA |
| 596 | 483.76 | wind | 3 | 43200 | < th | dose independent | rect. | 19 | 10 |
| 620 | 483.84 | wind | 3 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 623 | 483.85 | radiation | 40 | 720 | < th | dose dependent | rect. | 11 | 9 |
| 632 | 483.89 | wind | 3 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 634 | 483.91 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 639 | 483.93 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 8 |
| 658 | 484.07 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 673 | 484.08 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 710 | 484.25 | radiation | 1 | 720 | > th | dose dependent | rect. | 12 | 4 |
| 720 | 484.32 | wind | 3 | 43200 | > th | dose independent | rect. | 19 | 12 |
| 730 | 484.37 | temperature | 15 | 270 | > th | dose independent | rect. | 11 | 13 |
| 750 | 484.52 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 759 | 484.58 | wind | 9 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 763 | 484.60 | wind | 3 | 43200 | > th | dose independent | rect. | 19 | 10 |
| 769 | 484.64 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 776 | 484.68 | humidity | 70 | 720 | > th | dose independent | sin | 18 | NA |
| 788 | 484.72 | wind | 9 | 14400 | > th | dose independent | rect. | 20 | 18 |
| 793 | 484.74 | wind | 7 | 14400 | > th | dose dependent | sin | 5 | NA |
| 794 | 484.75 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 5 |
| 807 | 484.84 | wind | 1 | 90 | < th | dose independent | rect. | 3 | 2 |
| 811 | 484.85 | radiation | 30 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 831 | 484.96 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 8 |
| 861 | 485.04 | wind | 1 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 909 | 485.27 | humidity | 70 | 720 | > th | dose independent | rect. | 10 | 14 |
| 936 | 485.41 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 950 | 485.42 | humidity | 90 | 10 | > th | dose independent | rect. | 3 | 3 |
| 951 | 485.42 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 961 | 485.48 | radiation | 20 | 720 | > th | dose independent | rect. | 12 | 4 |
| 1000 | 485.66 | humidity | 90 | 10 | > th | dose dependent | rect. | 3 | 3 |