BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0479600 Os07g0479600|AK071565
(149 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0479600 Conserved hypothetical protein 311 2e-85
Os01g0172300 Conserved hypothetical protein 94 5e-20
Os02g0201000 Conserved hypothetical protein 86 8e-18
>Os07g0479600 Conserved hypothetical protein
Length = 149
Score = 311 bits (796), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 149/149 (100%), Positives = 149/149 (100%)
Query: 1 MGCCIGNLSKSQPLPDYKPKTSVRKKPRHLSIGKRRQCSSGLEAMENNVSVSVSLEGNIS 60
MGCCIGNLSKSQPLPDYKPKTSVRKKPRHLSIGKRRQCSSGLEAMENNVSVSVSLEGNIS
Sbjct: 1 MGCCIGNLSKSQPLPDYKPKTSVRKKPRHLSIGKRRQCSSGLEAMENNVSVSVSLEGNIS 60
Query: 61 SLPNSIINDSNGKDTSFINHAAIAWAEMRRQWTGDQEKVPKEASQEPIISWCTTYDDLLS 120
SLPNSIINDSNGKDTSFINHAAIAWAEMRRQWTGDQEKVPKEASQEPIISWCTTYDDLLS
Sbjct: 61 SLPNSIINDSNGKDTSFINHAAIAWAEMRRQWTGDQEKVPKEASQEPIISWCTTYDDLLS 120
Query: 121 TSERFPQPIPLSEMVDFLVDIWHEEGLYD 149
TSERFPQPIPLSEMVDFLVDIWHEEGLYD
Sbjct: 121 TSERFPQPIPLSEMVDFLVDIWHEEGLYD 149
>Os01g0172300 Conserved hypothetical protein
Length = 186
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 80/156 (51%), Gaps = 31/156 (19%)
Query: 1 MGCC------IGNLSKSQPLPDYKPKTSVRKKPRHLSIGKRRQCSSGLEAMENNVSVSVS 54
GCC +G LSKS PD ++ +IG ++ +E ++
Sbjct: 55 FGCCDKAVRHVGQLSKSLITPD-----------QNYTIGDELWSTTTIEVEQS------- 96
Query: 55 LEGNISSLPNSIINDSNGKDTSFINHAAIAWAEMRRQWTGDQEKVPKEAS-QEPIISWCT 113
+L + S G T F+NH + W E+R+ WT ++P+ +EPI+SW
Sbjct: 97 -----WALDQQGVGSSQGP-TEFVNHGLVLWKEIRKDWTAKTRQIPETKQIREPILSWNA 150
Query: 114 TYDDLLSTSERFPQPIPLSEMVDFLVDIWHEEGLYD 149
Y+ LL +++ F QPIPL EMVDFLVDIW +EGLYD
Sbjct: 151 AYESLLGSNKPFHQPIPLHEMVDFLVDIWEQEGLYD 186
>Os02g0201000 Conserved hypothetical protein
Length = 109
Score = 86.3 bits (212), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 63/109 (57%), Gaps = 4/109 (3%)
Query: 45 MENNVSVSVSLEGNISSLPNSIINDSNGKDTS---FINHAAIAWAEMRRQWTGDQ-EKVP 100
MEN+ S +IS+ S G T+ F+N + W + R+QW G++
Sbjct: 1 MENSAMQSQRSMSSISTAAQSSDQHGAGSSTNPNEFVNQGLLLWNQTRQQWVGNRRHNSQ 60
Query: 101 KEASQEPIISWCTTYDDLLSTSERFPQPIPLSEMVDFLVDIWHEEGLYD 149
++ +EP ISW TY+ LL +++ FPQ IPL EMVDFLVD W +EGLYD
Sbjct: 61 RQQPREPKISWNATYESLLGSTKPFPQAIPLGEMVDFLVDGWEQEGLYD 109
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.130 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,664,592
Number of extensions: 228763
Number of successful extensions: 412
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 410
Number of HSP's successfully gapped: 3
Length of query: 149
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 57
Effective length of database: 12,232,113
Effective search space: 697230441
Effective search space used: 697230441
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 151 (62.8 bits)