Os02g0201000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0201000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.41 | 0.196 | 12.7 | -1.14 | 0.774 | 0.395 | -0.403 | -0.184 | -0.427 | 21.3 | 24.6 | 5447 | -- | -- |
| 17.45 | 0.195 | 12.6 | -1.08 | 0.77 | 0.388 | -0.407 | -- | -0.417 | 21.4 | 24.59 | 5451 | -- | -- |
| 17.99 | 0.198 | 12.7 | -1.14 | 0.775 | 0.397 | -- | -0.244 | -0.434 | 21.4 | 24.6 | 5473 | -- | -- |
| 18.04 | 0.198 | 12.6 | -1.07 | 0.774 | 0.387 | -- | -- | -0.412 | 21.3 | 24.6 | 5482 | -- | -- |
| 48.59 | 0.325 | 12.6 | -1.1 | -- | 0.514 | -- | -0.0205 | -0.405 | -- | 26.4 | 2152 | -- | -- |
| 21.99 | 0.22 | 12.6 | -0.902 | 0.792 | -- | -0.373 | -- | -0.303 | 21.5 | -- | -- | -- | -- |
| 22.5 | 0.222 | 12.6 | -0.889 | 0.793 | -- | -- | -- | -0.303 | 21.5 | -- | -- | -- | -- |
| 48.25 | 0.324 | 12.6 | -1.06 | -- | 0.549 | -- | -- | -0.461 | -- | 25.81 | 2132 | -- | -- |
| 42.45 | 0.303 | 12.6 | -- | 0.796 | 0.13 | -- | -- | -0.194 | 21.4 | 30.6 | 5742 | -- | -- |
| 59.52 | 0.361 | 12.6 | -0.883 | -- | -- | -- | -- | -0.305 | -- | -- | -- | -- | -- |
| 43.32 | 0.308 | 12.6 | -- | 0.792 | -- | -- | -- | -0.204 | 21.4 | -- | -- | -- | -- |
| 69.05 | 0.387 | 12.6 | -- | -- | 0.493 | -- | -- | -0.359 | -- | 25.5 | 737 | -- | -- |
| 80.11 | 0.418 | 12.6 | -- | -- | -- | -- | -- | -0.207 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.64 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 2 | 16.67 | temperature | 10 | 30 | > th | dose dependent | rect. | 6 | 14 |
| 6 | 16.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 25 | 17.13 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 47 | 17.32 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 48 | 17.32 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 49 | 17.33 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 14 |
| 58 | 17.35 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 13 |
| 60 | 17.36 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 65 | 17.37 | temperature | 25 | 4320 | > th | dose independent | sin | 5 | NA |
| 71 | 17.38 | temperature | 25 | 4320 | < th | dose independent | sin | 5 | NA |
| 88 | 17.40 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 114 | 17.43 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 9 |
| 155 | 17.47 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 162 | 17.48 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 175 | 17.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 180 | 17.49 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 20 |
| 194 | 17.50 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 20 |
| 195 | 17.50 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 20 |
| 201 | 17.50 | temperature | 20 | 4320 | > th | dose dependent | sin | 4 | NA |
| 252 | 17.52 | temperature | 25 | 4320 | > th | dose independent | rect. | 12 | 21 |
| 259 | 17.52 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 306 | 17.54 | temperature | 25 | 4320 | < th | dose independent | rect. | 12 | 21 |
| 320 | 17.54 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 17 |
| 425 | 17.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 17 |
| 434 | 17.57 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 481 | 17.57 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 20 |
| 487 | 17.58 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 507 | 17.58 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 7 |
| 518 | 17.58 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 15 |
| 564 | 17.59 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 568 | 17.59 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 570 | 17.59 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 596 | 17.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 618 | 17.60 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 621 | 17.60 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 656 | 17.60 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 21 |
| 686 | 17.61 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 731 | 17.61 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 23 |
| 809 | 17.63 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 810 | 17.63 | temperature | 20 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 980 | 17.66 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 1 |