Os07g0479600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0479600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.55 | 0.303 | 10.6 | -0.333 | 1.3 | -0.29 | 0.205 | 6.7 | -0.424 | 7.17 | 30.7 | 1282 | -- | -- |
| 44.1 | 0.309 | 10.7 | -1.4 | 1.29 | 0.438 | 0.424 | -- | -0.388 | 7.08 | 32.4 | 1220 | -- | -- |
| 41.66 | 0.301 | 10.6 | -0.315 | 1.3 | -0.302 | -- | 6.81 | -0.425 | 7.15 | 30.7 | 1266 | -- | -- |
| 43.6 | 0.308 | 10.7 | -1.46 | 1.34 | 0.466 | -- | -- | -0.426 | 7.16 | 30.97 | 1233 | -- | -- |
| 130.5 | 0.532 | 10.6 | -0.12 | -- | -0.356 | -- | 7.36 | -0.397 | -- | 30 | 1391 | -- | -- |
| 54.16 | 0.345 | 10.8 | -1.34 | 1.33 | -- | 0.216 | -- | -0.515 | 6.97 | -- | -- | -- | -- |
| 54.28 | 0.345 | 10.8 | -1.34 | 1.33 | -- | -- | -- | -0.516 | 6.96 | -- | -- | -- | -- |
| 134.94 | 0.541 | 10.8 | -1.44 | -- | 0.48 | -- | -- | -0.396 | -- | 30.41 | 1358 | -- | -- |
| 97.28 | 0.459 | 10.7 | -- | 1.31 | 0.283 | -- | -- | -0.312 | 7.15 | 32.92 | 1193 | -- | -- |
| 146.75 | 0.566 | 10.8 | -1.31 | -- | -- | -- | -- | -0.491 | -- | -- | -- | -- | -- |
| 101.33 | 0.471 | 10.7 | -- | 1.31 | -- | -- | -- | -0.367 | 7.02 | -- | -- | -- | -- |
| 181.13 | 0.627 | 10.8 | -- | -- | 0.434 | -- | -- | -0.434 | -- | 33.8 | 7077 | -- | -- |
| 191.93 | 0.647 | 10.8 | -- | -- | -- | -- | -- | -0.346 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.34 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 2 | 41.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 3 | 41.45 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 6 | 41.60 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 9 | 41.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 22 | 41.75 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 28 | 41.79 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 31 | 41.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 32 | 41.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 10 |
| 33 | 41.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 41 | 41.85 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 43 | 41.88 | temperature | 30 | 1440 | < th | dose independent | sin | 9 | NA |
| 45 | 41.88 | temperature | 30 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 46 | 41.90 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 51 | 41.93 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 107 | 41.99 | temperature | 30 | 1440 | > th | dose dependent | sin | 19 | NA |
| 151 | 42.01 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 250 | 42.03 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 370 | 42.24 | temperature | 30 | 1440 | > th | dose independent | sin | 9 | NA |
| 440 | 42.39 | temperature | 30 | 1440 | > th | dose dependent | sin | 10 | NA |
| 479 | 42.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 16 |
| 481 | 42.56 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 2 |
| 524 | 42.63 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 526 | 42.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 530 | 42.65 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 537 | 42.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 541 | 42.72 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 601 | 42.96 | radiation | 40 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 745 | 43.44 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 777 | 43.48 | humidity | 60 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 805 | 43.54 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 903 | 43.57 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 949 | 43.64 | humidity | 80 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 1000 | 43.69 | radiation | 40 | 1440 | < th | dose independent | rect. | 14 | 1 |