BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0472200 Os07g0472200|AK061509
(147 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0472200 Similar to Zinc-finger protein Lsd1 300 2e-82
Os02g0807700 Zinc finger, LSD1-type domain containing protein 79 1e-15
Os08g0159500 Similar to Zinc-finger protein Lsd1 77 7e-15
>Os07g0472200 Similar to Zinc-finger protein Lsd1
Length = 147
Score = 300 bits (769), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 147/147 (100%), Positives = 147/147 (100%)
Query: 1 MVASRAPRSESPWLKKPMHGVSGSTAMASTPWSSMPPSSHSLGAQSQLVCSGCRNLLMYP 60
MVASRAPRSESPWLKKPMHGVSGSTAMASTPWSSMPPSSHSLGAQSQLVCSGCRNLLMYP
Sbjct: 1 MVASRAPRSESPWLKKPMHGVSGSTAMASTPWSSMPPSSHSLGAQSQLVCSGCRNLLMYP 60
Query: 61 AGATSICCAVCGTVTAVPAPEQKSSCNVHENKERLKGNTNGFRAPQRCARRVDGACTQVA 120
AGATSICCAVCGTVTAVPAPEQKSSCNVHENKERLKGNTNGFRAPQRCARRVDGACTQVA
Sbjct: 61 AGATSICCAVCGTVTAVPAPEQKSSCNVHENKERLKGNTNGFRAPQRCARRVDGACTQVA 120
Query: 121 REVHTEVALVIFTLLCVTLPGLLFSLG 147
REVHTEVALVIFTLLCVTLPGLLFSLG
Sbjct: 121 REVHTEVALVIFTLLCVTLPGLLFSLG 147
>Os02g0807700 Zinc finger, LSD1-type domain containing protein
Length = 68
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/51 (76%), Positives = 42/51 (82%)
Query: 31 PWSSMPPSSHSLGAQSQLVCSGCRNLLMYPAGATSICCAVCGTVTAVPAPE 81
P+ + P + GAQSQLVCSGCRNLLMYPAGATSICCAVC TVT VPAPE
Sbjct: 17 PYPTPVPFTPPNGAQSQLVCSGCRNLLMYPAGATSICCAVCSTVTVVPAPE 67
>Os08g0159500 Similar to Zinc-finger protein Lsd1
Length = 184
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/38 (94%), Positives = 37/38 (97%)
Query: 43 GAQSQLVCSGCRNLLMYPAGATSICCAVCGTVTAVPAP 80
GAQSQLVCSGCRNLLMYPAGATS+CCAVC TVTAVPAP
Sbjct: 61 GAQSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAP 98
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.129 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,455,381
Number of extensions: 214683
Number of successful extensions: 883
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 883
Number of HSP's successfully gapped: 3
Length of query: 147
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 56
Effective length of database: 12,284,327
Effective search space: 687922312
Effective search space used: 687922312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 151 (62.8 bits)