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Os07g0472200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Zinc-finger protein Lsd1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.15 (0.0198) R2 : 0.512
β1 : -1.06 (0.0723) R2dD : 0.241 R2D : 0.225
β2 : 0.772 (0.0481) R2dC : 0.278 R2C : 0.277
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.127 (0.0421) R2dN8 : 0.0131 R2N8 : -0.0105
σ : 0.371
deviance : 62.86
__
_____
C
peak time of C : 9.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
53.17 0.34 9.17 -1.15 0.719 0.926 -0.606 0.603 -0.237 8.43 10 10 -- --
53.41 0.343 9.18 -1.23 0.712 0.951 -0.543 -- -0.261 8.4 10 10 -- --
54.23 0.346 9.17 -1.2 0.713 0.943 -- 0.357 -0.247 8.43 10 10 -- --
54.33 0.346 9.18 -1.25 0.712 0.949 -- -- -0.26 8.44 10 10 -- --
82.42 0.425 9.2 -1.24 -- 1.06 -- 0.18 -0.261 -- 10 10 -- --
62.22 0.37 9.15 -1.05 0.771 -- -0.417 -- -0.127 9.73 -- -- -- --
62.86 0.371 9.15 -1.06 0.772 -- -- -- -0.127 9.8 -- -- -- --
82.45 0.425 9.2 -1.26 -- 1.06 -- -- -0.268 -- 10 10 -- --
90.27 0.445 9.13 -- 0.747 0.393 -- -- -0.0464 9.14 24.2 10 -- --
98.44 0.464 9.17 -1.07 -- -- -- -- -0.127 -- -- -- -- --
92.7 0.45 9.12 -- 0.775 -- -- -- -0.00886 9.9 -- -- -- --
121.44 0.515 9.16 -- -- 0.561 -- -- -0.085 -- 19.7 5 -- --
128.74 0.53 9.14 -- -- -- -- -- -0.00788 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.15 temperature 30 270 < th dose dependent rect. 23 19
11 52.01 temperature 30 10 < th dose dependent rect. 24 21
16 52.21 temperature 30 10 < th dose dependent rect. 24 19
17 52.24 temperature 30 10 < th dose dependent rect. 2 17
18 52.27 temperature 20 720 > th dose dependent rect. 3 8
21 52.28 temperature 20 720 > th dose dependent rect. 1 10
22 52.29 temperature 20 720 > th dose dependent rect. 3 6
24 52.31 temperature 20 720 > th dose dependent rect. 23 14
27 52.36 temperature 20 720 > th dose dependent sin 6 NA
29 52.39 temperature 20 720 > th dose dependent rect. 1 12
30 52.39 temperature 10 720 > th dose dependent rect. 23 16
31 52.41 temperature 15 10 > th dose dependent rect. 3 23
36 52.44 temperature 30 10 < th dose dependent rect. 2 19
39 52.47 temperature 10 720 > th dose dependent rect. 3 8
43 52.52 temperature 10 720 > th dose dependent rect. 1 14
52 52.56 temperature 10 720 > th dose dependent sin 6 NA
66 52.63 temperature 15 10 > th dose dependent rect. 1 23
70 52.64 temperature 10 720 > th dose dependent rect. 21 16
93 52.75 temperature 10 10 > th dose dependent sin 3 NA
110 52.80 temperature 30 10 < th dose dependent sin 2 NA
139 52.93 wind 9 43200 > th dose dependent rect. 17 4
154 52.99 temperature 30 720 < th dose dependent rect. 2 9
158 53.00 temperature 20 10 > th dose dependent rect. 3 21
169 53.02 temperature 30 10 < th dose dependent rect. 24 23
186 53.07 temperature 10 270 > th dose dependent rect. 16 23
197 53.09 temperature 20 10 > th dose dependent rect. 21 23
200 53.10 temperature 30 720 < th dose dependent sin 5 NA
202 53.10 temperature 15 270 > th dose dependent rect. 3 21
215 53.14 temperature 30 10 < th dose dependent rect. 11 23
225 53.16 temperature 20 10 > th dose dependent rect. 5 19
226 53.17 temperature 10 10 > th dose dependent no NA NA
245 53.22 temperature 20 10 > th dose dependent rect. 5 21
247 53.23 temperature 30 720 < th dose dependent rect. 5 6
258 53.24 wind 9 43200 > th dose dependent rect. 17 6
261 53.24 temperature 30 10 < th dose dependent rect. 9 23
269 53.26 temperature 30 10 < th dose dependent rect. 15 23
278 53.28 temperature 30 10 < th dose dependent no NA NA
288 53.29 temperature 30 10 < th dose dependent rect. 13 23
324 53.34 temperature 30 10 < th dose dependent rect. 22 23
339 53.38 wind 9 43200 > th dose dependent rect. 17 13
341 53.39 wind 9 43200 < th dose independent rect. 18 3
352 53.41 wind 9 43200 > th dose independent rect. 18 4
355 53.41 temperature 15 270 > th dose dependent rect. 5 18
357 53.41 temperature 20 10 > th dose dependent rect. 23 23
358 53.42 wind 7 43200 > th dose independent rect. 20 1
383 53.46 wind 9 43200 > th dose dependent rect. 17 8
388 53.46 temperature 15 270 > th dose dependent rect. 6 16
390 53.46 temperature 20 10 > th dose dependent rect. 17 23
398 53.47 temperature 10 270 > th dose dependent rect. 1 23
428 53.52 wind 9 43200 < th dose independent rect. 20 1
452 53.55 temperature 30 10 < th dose dependent rect. 17 23
460 53.56 temperature 20 10 > th dose dependent rect. 7 23
491 53.62 wind 7 43200 > th dose dependent rect. 20 1
493 53.62 temperature 20 10 > th dose dependent rect. 7 17
607 53.84 radiation 1 43200 < th dose dependent rect. 20 5
614 53.85 temperature 30 1440 < th dose dependent rect. 17 1
626 53.86 temperature 30 10 < th dose dependent rect. 19 23
657 53.91 temperature 30 10 < th dose dependent rect. 7 23
687 53.96 radiation 1 43200 < th dose dependent rect. 22 3
717 54.01 temperature 20 10 > th dose dependent rect. 7 19
738 54.05 wind 9 43200 > th dose independent rect. 18 10
739 54.05 temperature 30 720 < th dose dependent rect. 7 2
762 54.10 radiation 1 43200 < th dose dependent rect. 20 7
777 54.12 wind 9 43200 < th dose independent rect. 18 7
783 54.12 temperature 20 10 > th dose dependent rect. 5 17
822 54.18 wind 9 43200 < th dose independent rect. 18 9
858 54.21 temperature 30 4320 < th dose dependent rect. 1 1
885 54.23 temperature 10 4320 > th dose dependent rect. 1 1
920 54.26 temperature 25 720 < th dose dependent rect. 5 2