BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0472200 Os07g0472200|AK061509
         (147 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32540.1  | chr1:11768253-11769591 FORWARD LENGTH=188           69   1e-12
AT4G20380.8  | chr4:11005027-11006438 FORWARD LENGTH=211           50   4e-07

>AT1G32540.1 | chr1:11768253-11769591 FORWARD LENGTH=188
          Length = 187

 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/40 (80%), Positives = 33/40 (82%)

Query: 41  SLGAQSQLVCSGCRNLLMYPAGATSICCAVCGTVTAVPAP 80
           S   QSQLVCSGCRNLLMYP GATS+CCAVC  VTAVP P
Sbjct: 61  STSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPP 100



>AT4G20380.8 | chr4:11005027-11006438 FORWARD LENGTH=211
          Length = 210

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 21/33 (63%), Positives = 26/33 (78%)

Query: 45 QSQLVCSGCRNLLMYPAGATSICCAVCGTVTAV 77
          Q QLVC GCRNLLMYP GA+++ CA+C T+  V
Sbjct: 2  QDQLVCHGCRNLLMYPRGASNVRCALCNTINMV 34



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.129    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,287,522
Number of extensions: 123975
Number of successful extensions: 361
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 2
Length of query: 147
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 58
Effective length of database: 8,666,545
Effective search space: 502659610
Effective search space used: 502659610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)