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Os02g0807700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, LSD1-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0185) R2 : 0.653
β1 : -1.14 (0.0681) R2dD : 0.229 R2D : 0.179
β2 : 0.569 (0.0458) R2dC : 0.118 R2C : 0.118
β3 : -7.13 (0.346) R2dE : 0.329 R2E : 0.265
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.16 (0.0395) R2dN8 : 0.0156 R2N8 : 0.0356
σ : 0.345
deviance : 54.93
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C
peak time of C : 8.99
E
wheather : temperature
threshold : 19.71
memory length : 95
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12
open length of G : 4.01

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
55.01 0.348 10.5 -1.24 0.568 -21.4 0.0381 -30.5 0.148 9.03 19.81 94 12 3.97
55.76 0.35 10.6 -1.12 0.559 -7.16 0.114 -- 0.158 8.97 19.81 94 12 3.97
54.98 0.345 10.5 -1.24 0.561 -21.3 -- -30.4 0.147 8.96 19.78 94 12 3.97
54.93 0.345 10.6 -1.14 0.569 -7.13 -- -- 0.16 8.99 19.71 95 12 4.01
73.44 0.399 10.5 -1.24 -- -21 -- -29.7 0.152 -- 19.7 97 12 4.05
106 0.483 10.6 -0.982 0.589 -- -0.149 -- 0.19 8.49 -- -- -- --
106.07 0.482 10.6 -0.986 0.588 -- -- -- 0.191 8.56 -- -- -- --
73.52 0.399 10.6 -1.14 -- -7.3 -- -- 0.153 -- 19.79 97 12 4.12
88.36 0.44 10.5 -- 0.559 -6.61 -- -- 0.283 9.07 19.34 84 12.2 3.98
125.48 0.523 10.6 -0.984 -- -- -- -- 0.196 -- -- -- -- --
131.69 0.537 10.5 -- 0.585 -- -- -- 0.301 8.69 -- -- -- --
106.37 0.482 10.6 -- -- -6.69 -- -- 0.287 -- 19.52 77 12.4 4
151.02 0.574 10.5 -- -- -- -- -- 0.305 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.59 temperature 20 90 < th dose dependent rect. 12 4
2 55.62 temperature 20 10 < th dose dependent rect. 12 5
3 55.74 radiation 1 90 < th dose independent rect. 14 1
4 55.74 radiation 1 90 < th dose dependent rect. 14 1
8 57.57 temperature 20 10 < th dose dependent rect. 10 7
12 59.40 temperature 25 90 < th dose dependent rect. 14 1
19 60.76 temperature 20 90 < th dose independent rect. 12 4
32 63.65 temperature 20 90 < th dose independent rect. 14 2
103 77.31 radiation 1 90 < th dose dependent rect. 10 6
145 80.00 atmosphere 1005 30 > th dose dependent rect. 15 1
147 80.08 humidity 70 10 > th dose dependent rect. 15 2
162 80.67 humidity 80 10 > th dose independent rect. 15 1
193 81.22 temperature 20 270 < th dose independent rect. 12 1
194 81.23 temperature 20 10 < th dose independent rect. 12 5
271 84.65 atmosphere 1005 30 > th dose independent rect. 15 1
311 85.84 radiation 1 10 < th dose independent rect. 16 1
339 86.60 temperature 20 10 < th dose independent rect. 10 7
351 86.83 humidity 80 10 > th dose dependent rect. 12 5
450 88.83 temperature 20 90 < th dose independent rect. 3 14
456 88.91 wind 3 90 > th dose independent rect. 15 1
467 89.14 temperature 20 90 > th dose independent sin 22 NA
474 89.37 temperature 20 90 < th dose independent sin 23 NA
497 89.74 atmosphere 1015 4320 > th dose dependent rect. 16 5
511 89.94 temperature 20 10 < th dose independent rect. 2 15
523 90.10 atmosphere 1015 4320 < th dose independent rect. 16 4
528 90.13 radiation 1 10 < th dose dependent rect. 6 11
531 90.16 temperature 20 90 < th dose independent rect. 3 18
535 90.18 temperature 20 90 < th dose independent rect. 1 18
550 90.28 temperature 20 90 < th dose independent rect. 5 12
559 90.37 temperature 25 10 < th dose dependent rect. 24 18
564 90.39 temperature 25 10 < th dose dependent rect. 2 16
565 90.40 wind 5 10 < th dose independent rect. 16 1
569 90.46 temperature 20 90 < th dose independent rect. 1 20
594 90.68 temperature 20 10 < th dose independent rect. 24 17
614 90.84 temperature 30 90 < th dose dependent rect. 1 16
681 91.15 atmosphere 1015 4320 > th dose independent rect. 16 5
695 91.21 wind 7 90 < th dose independent rect. 15 1
712 91.30 temperature 15 720 < th dose independent rect. 4 9
714 91.31 radiation 1 30 < th dose independent rect. 11 6
733 91.38 temperature 15 720 < th dose dependent rect. 4 9
746 91.42 temperature 30 10 < th dose dependent rect. 15 18
753 91.45 radiation 1 30 < th dose independent rect. 6 11
759 91.46 temperature 25 10 < th dose dependent rect. 24 22
766 91.49 temperature 15 720 < th dose independent rect. 4 1
776 91.49 temperature 15 720 < th dose dependent rect. 4 1
806 91.59 temperature 20 90 > th dose independent rect. 9 14
835 91.69 atmosphere 1015 4320 > th dose independent rect. 16 1
838 91.69 atmosphere 1015 4320 > th dose dependent rect. 16 1
879 91.83 temperature 20 720 < th dose independent rect. 5 11
886 91.85 temperature 25 90 < th dose dependent rect. 1 22
950 92.05 radiation 30 90 < th dose independent rect. 15 1
986 92.15 temperature 30 10 < th dose dependent rect. 12 21