BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0807700 Os02g0807700|AK099623
         (68 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0807700  Zinc finger, LSD1-type domain containing protein     98   1e-21
Os08g0159500  Similar to Zinc-finger protein Lsd1                  80   3e-16
Os07g0472200  Similar to Zinc-finger protein Lsd1                  78   2e-15

>Os02g0807700 Zinc finger, LSD1-type domain containing protein
          Length = 68

 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/68 (76%), Positives = 52/68 (76%)

Query: 1  MPSVQAAGTAMXXXXXXXXXXXXXXXXNGAQSQLVCSGCRNLLMYPAGATSICCAVCSTV 60
          MPSVQAAGTAM                NGAQSQLVCSGCRNLLMYPAGATSICCAVCSTV
Sbjct: 1  MPSVQAAGTAMPVPLAPYPTPVPFTPPNGAQSQLVCSGCRNLLMYPAGATSICCAVCSTV 60

Query: 61 TVVPAPEI 68
          TVVPAPEI
Sbjct: 61 TVVPAPEI 68



>Os08g0159500 Similar to Zinc-finger protein Lsd1
          Length = 184

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 46/64 (71%), Gaps = 1/64 (1%)

Query: 4  VQAAGTAMXX-XXXXXXXXXXXXXXNGAQSQLVCSGCRNLLMYPAGATSICCAVCSTVTV 62
          VQAAGTAM                 NGAQSQLVCSGCRNLLMYPAGATS+CCAVCSTVT 
Sbjct: 35 VQAAGTAMPVPLAPYPTPPVPFTPPNGAQSQLVCSGCRNLLMYPAGATSVCCAVCSTVTA 94

Query: 63 VPAP 66
          VPAP
Sbjct: 95 VPAP 98



>Os07g0472200 Similar to Zinc-finger protein Lsd1
          Length = 147

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/39 (94%), Positives = 37/39 (94%)

Query: 29 GAQSQLVCSGCRNLLMYPAGATSICCAVCSTVTVVPAPE 67
          GAQSQLVCSGCRNLLMYPAGATSICCAVC TVT VPAPE
Sbjct: 43 GAQSQLVCSGCRNLLMYPAGATSICCAVCGTVTAVPAPE 81



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.128    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,676,561
Number of extensions: 37259
Number of successful extensions: 140
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 3
Length of query: 68
Length of database: 17,035,801
Length adjustment: 40
Effective length of query: 28
Effective length of database: 14,947,241
Effective search space: 418522748
Effective search space used: 418522748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)