BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0456400 Os07g0456400|AK063477
(348 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0456400 LUC7 related family protein 541 e-154
Os03g0843500 Similar to Sarcoplasmic reticulum protein (Wit... 94 1e-19
Os02g0605600 LUC7 related family protein 88 1e-17
>Os07g0456400 LUC7 related family protein
Length = 348
Score = 541 bits (1395), Expect = e-154, Method: Compositional matrix adjust.
Identities = 275/348 (79%), Positives = 275/348 (79%)
Query: 1 MDAQRALLDELMGTARDLTEEERKAHKEVRWDDPDVCAAFMARFCPHDLFVNTKSNLGPC 60
MDAQRALLDELMGTARDLTEEERKAHKEVRWDDPDVCAAFMARFCPHDLFVNTKSNLGPC
Sbjct: 1 MDAQRALLDELMGTARDLTEEERKAHKEVRWDDPDVCAAFMARFCPHDLFVNTKSNLGPC 60
Query: 61 MKIHDLKLKESFESSPRRETHMRRFEAELAQQCEKLVIDLDRKIRRGRERLAQDVAVPPP 120
MKIHDLKLKESFESSPRRETHMRRFEAELAQQCEKLVIDLDRKIRRGRERLAQDVAVPPP
Sbjct: 61 MKIHDLKLKESFESSPRRETHMRRFEAELAQQCEKLVIDLDRKIRRGRERLAQDVAVPPP 120
Query: 121 VIGKTSEQLSIIEEKVKKLLEQIEELGEAGKVDEAEALMRKVELLNAEKTALTNQADNKV 180
VIGKTSEQLSIIEEKVKKLLEQIEELGEAGKVDEAEALMRKVELLNAEKTALTNQADNKV
Sbjct: 121 VIGKTSEQLSIIEEKVKKLLEQIEELGEAGKVDEAEALMRKVELLNAEKTALTNQADNKV 180
Query: 181 AMLPQEKKMELCEICGSFLVADDVLERTQSHVTGKQHIGYGLVRDFLXXXXXXXXXXXXX 240
AMLPQEKKMELCEICGSFLVADDVLERTQSHVTGKQHIGYGLVRDFL
Sbjct: 181 AMLPQEKKMELCEICGSFLVADDVLERTQSHVTGKQHIGYGLVRDFLAEHKAAKEKARDE 240
Query: 241 XXXXXXXXXXXXXXXXXXXYDVGGRDGGSRREKSGXXXXXXXXXXXXXXXXXXSHDHRDR 300
YDVGGRDGGSRREKSG SHDHRDR
Sbjct: 241 ERIAREKKAEERRKQREKEYDVGGRDGGSRREKSGDRDYDRDRYYDRNRGRERSHDHRDR 300
Query: 301 GSEYRSSSYRNGRDSERDRHXXXXXXXXXXXXXXXXXXXXXXXHGPDQ 348
GSEYRSSSYRNGRDSERDRH HGPDQ
Sbjct: 301 GSEYRSSSYRNGRDSERDRHRYRSDDMRKDRSRVRSRSRSPSRHGPDQ 348
>Os03g0843500 Similar to Sarcoplasmic reticulum protein (With alternative
splicing)
Length = 329
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 108/197 (54%), Gaps = 21/197 (10%)
Query: 1 MDAQRALLDELMGTAR--DLTEEERKAHKEVRWDDPDVCAAFMARFCPHDLFVNTKSNLG 58
MDA R LD LMG R D+ E RK + D DVC F+A CPHDLF TK +LG
Sbjct: 1 MDAMRKQLDVLMGANRNGDVREVSRK------YYDRDVCRLFLAGLCPHDLFQLTKMDLG 54
Query: 59 PCMKIHDLKLKESFESSPRRETHMRRFEAELAQQCEKLVIDLDRKIRRGRERLAQD---- 114
PC K+H L+L++ +E + T ++ EL + ++L+++ +RKI+R +RLA +
Sbjct: 55 PCPKVHSLQLRKDYEEVKAKGTE--NYDRELEEMIDRLIVECERKIQRALKRLADEDAKA 112
Query: 115 -VAVPPPVIGKTSEQLSIIEEKVKKLLEQIEELGEAGKVDEAEALMRKVELLNAEK---- 169
+A+ + +T E L + +E +K+ +++++ GK D+ M VE L +++
Sbjct: 113 AIAISVSEVTQTDEVLQLSKE-IKEKMKEVDTYDFEGKTDDKIKTMEVVEELRSKRADMQ 171
Query: 170 -TALTNQADNKVAMLPQ 185
T L + + A LPQ
Sbjct: 172 ATLLLDAFNKDRASLPQ 188
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 64/122 (52%), Gaps = 21/122 (17%)
Query: 115 VAVPPPVIGKTSEQLSIIEEKVKKLLEQIEELGEAGKVDEAEALMRKVELL--------- 165
V P P +T E +I EK+KK EELGE G VDEA+ +M + E L
Sbjct: 198 VPAPAPPDARTQE---MINEKIKK----AEELGEQGMVDEAQKVMEEAEALKKLAARREP 250
Query: 166 NAEKTALTNQADNKVAMLPQEKKMELCEICGSFLVADDVLERTQSHVTGKQHIGYGLVRD 225
++ T T AD ++ ++K+ LC+ICG+FL D R H GK H+GY L+R+
Sbjct: 251 TSDPTKYT-AADVRIT----DQKLRLCDICGAFLSVYDNDRRLADHFGGKLHLGYMLIRE 305
Query: 226 FL 227
L
Sbjct: 306 KL 307
>Os02g0605600 LUC7 related family protein
Length = 418
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 91/159 (57%), Gaps = 14/159 (8%)
Query: 1 MDAQRALLDELMGTAR--DLTEEERKAHKEVRWDDPDVCAAFMARFCPHDLFVNTKSNLG 58
MDA R LD+LMG R D+ E RK + D DVC F+A CPHDLF TK ++G
Sbjct: 1 MDAIRKQLDQLMGANRNGDVREVSRK------YYDRDVCRLFLAGLCPHDLFQLTKMDMG 54
Query: 59 PCMKIHDLKLKESFESSPRRETHMRRFEAELAQQCEKLVIDLDRKIRRGRERLAQDVAVP 118
PC K+H L+L++ +E + + M ++ EL + E+L+ + +RKI+R +RL +D A
Sbjct: 55 PCPKMHSLQLRKEYEEA--KAKGMDNYDRELEETIERLISECERKIQRALKRLEEDDAKA 112
Query: 119 PPVIGKT--SEQLSIIE--EKVKKLLEQIEELGEAGKVD 153
I T ++ +IE +++K+ +++I+ G +
Sbjct: 113 AIAISITEVTQSKEVIEFSKQIKEKMKEIDAFDLEGNTE 151
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,495,218
Number of extensions: 332745
Number of successful extensions: 1174
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1164
Number of HSP's successfully gapped: 5
Length of query: 348
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 246
Effective length of database: 11,709,973
Effective search space: 2880653358
Effective search space used: 2880653358
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)