Os03g0843500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Sarcoplasmic reticulum protein (With alternative splicing).
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Os03g0843500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Sarcoplasmic reticulum protein (With alternative splicing).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.2 | 0.319 | 11.5 | -1.87 | 0.228 | 0.185 | 1.11 | -3.28 | -0.12 | 1.09 | 18.2 | 4650 | -- | -- |
| 54.94 | 0.348 | 11.3 | -0.973 | 0.342 | 0.433 | 1.2 | -- | 0.107 | 1.26 | 14.86 | 8006 | -- | -- |
| 49.86 | 0.331 | 11.4 | -1.51 | 0.331 | 0.412 | -- | -3.18 | -0.0339 | 0.421 | 18.2 | 4650 | -- | -- |
| 60.31 | 0.362 | 11.4 | -1.08 | 0.217 | 0.283 | -- | -- | 0.0815 | 23.8 | 13.87 | 7300 | -- | -- |
| 54.82 | 0.347 | 11.4 | -1.43 | -- | 0.106 | -- | -3.11 | 0.0227 | -- | 18.2 | 4650 | -- | -- |
| 56.86 | 0.354 | 11.3 | -0.889 | 0.225 | -- | 1.13 | -- | 0.168 | 1.08 | -- | -- | -- | -- |
| 61.89 | 0.368 | 11.3 | -0.928 | 0.233 | -- | -- | -- | 0.163 | 23.8 | -- | -- | -- | -- |
| 63.21 | 0.37 | 11.4 | -1.11 | -- | 0.358 | -- | -- | 0.0639 | -- | 9.972 | 8119 | -- | -- |
| 66.54 | 0.38 | 11.3 | -- | 0.248 | -0.617 | -- | -- | 0.505 | 23.8 | 24.3 | 47520 | -- | -- |
| 65.3 | 0.378 | 11.3 | -0.921 | -- | -- | -- | -- | 0.166 | -- | -- | -- | -- | -- |
| 84.59 | 0.43 | 11.3 | -- | 0.222 | -- | -- | -- | 0.267 | 23.6 | -- | -- | -- | -- |
| 70.29 | 0.39 | 11.3 | -- | -- | -0.599 | -- | -- | 0.501 | -- | 25.6 | 47520 | -- | -- |
| 87.69 | 0.437 | 11.3 | -- | -- | -- | -- | -- | 0.268 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.73 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 18 | 20 |
| 2 | 44.77 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 18 | 20 |
| 5 | 44.91 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 16 | 18 |
| 8 | 44.97 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 6 | NA |
| 10 | 45.02 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 10 | 20 |
| 16 | 45.05 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 27 | 45.10 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 6 | NA |
| 29 | 45.11 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 21 | 17 |
| 53 | 45.24 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 5 |
| 55 | 45.24 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 5 |
| 56 | 45.24 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 5 |
| 60 | 45.25 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 61 | 45.25 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 63 | 45.25 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 90 | 45.38 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 93 | 45.39 | atmosphere | 995.0 | 43200 | < th | dose dependent | no | NA | NA |
| 95 | 45.39 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 21 |
| 103 | 45.40 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 107 | 45.41 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 9 | NA |
| 122 | 45.43 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 123 | 45.43 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 133 | 45.45 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 155 | 45.49 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 159 | 45.49 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 1 | 23 |
| 212 | 45.61 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 214 | 45.62 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 222 | 45.63 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 223 | 45.63 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 231 | 45.64 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 2 | 9 |
| 244 | 45.67 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 245 | 45.67 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 246 | 45.67 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 250 | 45.67 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 251 | 45.68 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 260 | 45.69 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 308 | 45.77 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 371 | 45.91 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 9 | 6 |
| 390 | 45.95 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 8 | 11 |
| 397 | 45.96 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 21 | 10 |
| 413 | 45.98 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 452 | 46.03 | temperature | 20.0 | 4320 | > th | dose dependent | sin | 22 | NA |
| 455 | 46.04 | wind | 7.0 | 43200 | < th | dose independent | rect. | 21 | 10 |
| 460 | 46.05 | wind | 7.0 | 43200 | > th | dose independent | rect. | 21 | 10 |
| 480 | 46.07 | wind | 7.0 | 43200 | > th | dose independent | rect. | 21 | 8 |
| 492 | 46.08 | wind | 7.0 | 43200 | < th | dose independent | rect. | 21 | 8 |
| 513 | 46.10 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 517 | 46.11 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 16 | NA |
| 547 | 46.14 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 4 |
| 596 | 46.21 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 615 | 46.23 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 649 | 46.27 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 656 | 46.28 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 657 | 46.28 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 658 | 46.28 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 663 | 46.28 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 1 | 8 |
| 686 | 46.31 | wind | 5.0 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 729 | 46.37 | wind | 7.0 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 746 | 46.39 | wind | 5.0 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 754 | 46.39 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 6 | 9 |
| 765 | 46.40 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 774 | 46.41 | wind | 7.0 | 43200 | < th | dose independent | rect. | 21 | 3 |
| 776 | 46.41 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 8 | 7 |
| 830 | 46.45 | temperature | 10.0 | 4320 | > th | dose dependent | sin | 0 | NA |
| 841 | 46.45 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 6 | 15 |
| 845 | 46.46 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 862 | 46.46 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 6 | 9 |
| 875 | 46.47 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 12 | 1 |