BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0843500 Os03g0843500|AK101661
(329 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G03340.1 | chr3:786439-789762 FORWARD LENGTH=403 480 e-136
AT5G17440.1 | chr5:5749849-5753415 FORWARD LENGTH=405 480 e-136
AT5G51410.1 | chr5:20881821-20883577 REVERSE LENGTH=335 85 4e-17
>AT3G03340.1 | chr3:786439-789762 FORWARD LENGTH=403
Length = 402
Score = 480 bits (1236), Expect = e-136, Method: Compositional matrix adjust.
Identities = 234/311 (75%), Positives = 267/311 (85%), Gaps = 4/311 (1%)
Query: 1 MDAMRKQLDVLMGANRNGDVREVSRKYYDRDVCRLFLAGLCPHDLFQLTKMDLGPCPKVH 60
MDA+RKQLDVLMGANRNGDV+EV+RKYYDRDVCRL+L+GLCPHDLFQLTKMD+GPCPKVH
Sbjct: 1 MDAIRKQLDVLMGANRNGDVQEVNRKYYDRDVCRLYLSGLCPHDLFQLTKMDMGPCPKVH 60
Query: 61 SLQLRKDYEEVKAKGTENYDRELEEMIDRLIVECERKIQRALKRLADEDAKAAIAISVSE 120
SLQLRK+Y E +AKG +NYDRELE+ IDRLIVEC+RKI RALKRL +EDAKAAIAISVSE
Sbjct: 61 SLQLRKEYREARAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLQEEDAKAAIAISVSE 120
Query: 121 VTQTDEVLQLSKEIKEKMKEVDTYDFEGKTDDKIKTMEVVEELRSKRADMQATLLLDAFN 180
VTQ+ E+L+LS++IKEKMKE D +D EGK D KI+ +E+VEE+R+KRAD QA LLL+AFN
Sbjct: 121 VTQSPEILELSEKIKEKMKEADIHDLEGKMDLKIRALELVEEMRTKRADQQAVLLLEAFN 180
Query: 181 KDRASLPQPTPT-PQMASVPAPAPPDARTQEMINEKIKKAEELGEQGMVDEAQKVMXXXX 239
KDRASLPQP P P + +P PPD RTQEMINEK+KKAE+LGEQGMVDEAQK +
Sbjct: 181 KDRASLPQPVPAQPPSSELP---PPDPRTQEMINEKLKKAEDLGEQGMVDEAQKALEEAE 237
Query: 240 XXXXXXXXXXPTSDPTKYTAADVRITDQKLRLCDICGAFLSVYDNDRRLADHFGGKLHLG 299
P +D TKYTA DVRITDQKLRLCDICGAFLSVYD+DRRLADHFGGKLHLG
Sbjct: 238 ALKKLTVRREPPADSTKYTAVDVRITDQKLRLCDICGAFLSVYDSDRRLADHFGGKLHLG 297
Query: 300 YMLIREKLKEL 310
YML+R+KL EL
Sbjct: 298 YMLVRDKLTEL 308
>AT5G17440.1 | chr5:5749849-5753415 FORWARD LENGTH=405
Length = 404
Score = 480 bits (1235), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/312 (75%), Positives = 266/312 (85%), Gaps = 4/312 (1%)
Query: 1 MDAMRKQLDVLMGANRNGDVREVSRKYYDRDVCRLFLAGLCPHDLFQLTKMDLGPCPKVH 60
MDAMRKQLDVLMGANRNGDV EV+RKYYDRDVCRL+L+GLCPH+LFQLTKMD+GPCPKVH
Sbjct: 1 MDAMRKQLDVLMGANRNGDVTEVNRKYYDRDVCRLYLSGLCPHELFQLTKMDMGPCPKVH 60
Query: 61 SLQLRKDYEEVKAKGTENYDRELEEMIDRLIVECERKIQRALKRLADEDAKAAIAISVSE 120
SLQLRK+Y++ KAKG +NYDRELE+ IDRLIVEC+RKI RAL RL +EDAKAAIAISV+E
Sbjct: 61 SLQLRKEYKDAKAKGVDNYDRELEDAIDRLIVECDRKIGRALNRLQEEDAKAAIAISVTE 120
Query: 121 VTQTDEVLQLSKEIKEKMKEVDTYDFEGKTDDKIKTMEVVEELRSKRADMQATLLLDAFN 180
TQ+ E+L+LSK+IKEKMKE D +D EGKTD KI+ +E+VEE+R+KRAD+QA LLLDAFN
Sbjct: 121 FTQSPEILELSKQIKEKMKEADLHDLEGKTDLKIRALELVEEMRTKRADLQAVLLLDAFN 180
Query: 181 KDRASLPQPTPTPQ-MASVPAPAPPDARTQEMINEKIKKAEELGEQGMVDEAQKVMXXXX 239
KDR SL Q P Q A++P PPD RTQEMINEK+KKAEELGEQGMVDEAQK +
Sbjct: 181 KDRTSLQQAVPAQQPAATLP---PPDPRTQEMINEKLKKAEELGEQGMVDEAQKALEEAE 237
Query: 240 XXXXXXXXXXPTSDPTKYTAADVRITDQKLRLCDICGAFLSVYDNDRRLADHFGGKLHLG 299
P D TKYTAADVRITDQKLRLCDICGAFLSVYD+DRRLADHFGGKLHLG
Sbjct: 238 ALKKLTARQEPVVDSTKYTAADVRITDQKLRLCDICGAFLSVYDSDRRLADHFGGKLHLG 297
Query: 300 YMLIREKLKELQ 311
YMLIR+KL ELQ
Sbjct: 298 YMLIRDKLAELQ 309
>AT5G51410.1 | chr5:20881821-20883577 REVERSE LENGTH=335
Length = 334
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 97/175 (55%), Gaps = 12/175 (6%)
Query: 1 MDAMRKQLDVLMGANRN------GDVREVSRKYYDRDVCRLFLAGLCPHDLFQLTKMDLG 54
MDA R LD LMGA RN +EV K+ DR+VC ++ CPHDLF TK DLG
Sbjct: 1 MDAQRALLDELMGAARNLTDEERRGFKEV--KWDDREVCAFYMVRFCPHDLFVNTKSDLG 58
Query: 55 PCPKVHSLQLRKDYEEVKAKGT--ENYDRELEEMIDRLIVECERKIQRALKRLADEDAKA 112
C ++H +L++ +E + ++ EL + ++L+ + +RK++R +RLA E +
Sbjct: 59 ACSRIHDPKLKESFENSPRHDSYVPKFEAELAQFCEKLVNDLDRKVRRGRERLAQE-VEP 117
Query: 113 AIAISVSEVTQTDEVLQLSKEIKEKMKEVDTYDFEGKTDDKIKTMEVVEELRSKR 167
S+S + +++ L +++K +++V+ EGK D+ M VE L +++
Sbjct: 118 VPPPSLS-AEKAEQLSVLEEKVKNLLEQVEALGEEGKVDEAEALMRKVEGLNAEK 171
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 188 QPTPTPQMASVPAPAPPDARTQEMINEKIKKAEELGEQGMVDEAQKVMXXXXXXXXXXXX 247
+P P P +++ A + +E + +++ E LGE+G VDEA+ +M
Sbjct: 116 EPVPPPSLSAEKAEQL--SVLEEKVKNLLEQVEALGEEGKVDEAEALMRKVEGLNAEKTV 173
Query: 248 XXPTSDPTKYTAADVRITDQKLRLCDICGAFLSVYDNDRRLADHFGGKLHLGYMLIREKL 307
PT A + ++K+ LC++CG+FL D R H GK H+GY L+R+ +
Sbjct: 174 L--LQRPTDKVLAMAQ--EKKMALCEVCGSFLVANDAVERTQSHVTGKQHVGYGLVRDFI 229
Query: 308 KE 309
E
Sbjct: 230 AE 231
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,821,187
Number of extensions: 285743
Number of successful extensions: 2151
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2148
Number of HSP's successfully gapped: 4
Length of query: 329
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 230
Effective length of database: 8,392,385
Effective search space: 1930248550
Effective search space used: 1930248550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)