Os07g0456400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : LUC7 related family protein.
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Os07g0456400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : LUC7 related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.37 | 0.232 | 9.16 | -0.577 | 0.489 | 1.19 | 0.42 | -1.19 | -0.175 | 13.9 | 9.449 | 45 | -- | -- |
| 25.19 | 0.234 | 9.14 | -0.407 | 0.479 | 1.19 | 0.127 | -- | -0.131 | 13.8 | 8.824 | 44 | -- | -- |
| 24.86 | 0.232 | 9.15 | -0.503 | 0.479 | 1.21 | -- | -0.702 | -0.159 | 13.8 | 7.077 | 46 | -- | -- |
| 25.25 | 0.234 | 9.14 | -0.405 | 0.478 | 1.19 | -- | -- | -0.131 | 13.8 | 8.753 | 44 | -- | -- |
| 33.8 | 0.271 | 9.17 | -0.6 | -- | 1.76 | -- | -0.548 | -0.241 | -- | 12.46 | 13 | -- | -- |
| 38.59 | 0.291 | 9.1 | -0.176 | 0.809 | -- | 0.295 | -- | 0.0339 | 14.2 | -- | -- | -- | -- |
| 38.92 | 0.292 | 9.1 | -0.167 | 0.81 | -- | -- | -- | 0.0356 | 14.2 | -- | -- | -- | -- |
| 34.06 | 0.272 | 9.16 | -0.524 | -- | 1.75 | -- | -- | -0.22 | -- | 10.72 | 13 | -- | -- |
| 29.12 | 0.251 | 9.12 | -- | 0.538 | 0.955 | -- | -- | -0.0629 | 13.9 | 15.35 | 40 | -- | -- |
| 78.04 | 0.413 | 9.11 | -0.201 | -- | -- | -- | -- | 0.0162 | -- | -- | -- | -- | -- |
| 39.65 | 0.295 | 9.1 | -- | 0.813 | -- | -- | -- | 0.0542 | 14.2 | -- | -- | -- | -- |
| 40.41 | 0.297 | 9.14 | -- | -- | 1.35 | -- | -- | -0.142 | -- | 17.94 | 22 | -- | -- |
| 79.1 | 0.415 | 9.1 | -- | -- | -- | -- | -- | 0.0385 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.37 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 2 | 24.41 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 6 | 24.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 7 | 24.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 11 | 24.61 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 12 | 24.62 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 14 | 24.66 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 17 | 24.69 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 21 | 24.73 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 25 | 24.79 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 29 | 24.85 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 30 | 25.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 38 | 25.21 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 39 | 25.23 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 53 | 25.40 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 61 | 25.47 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 65 | 25.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 82 | 25.81 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 87 | 25.89 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 117 | 26.15 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 151 | 26.44 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 157 | 26.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 167 | 26.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 233 | 26.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 260 | 27.00 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 334 | 27.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 338 | 27.37 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 8 |
| 348 | 27.42 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 10 |
| 350 | 27.43 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 7 |
| 362 | 27.45 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 16 |
| 369 | 27.47 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 372 | 27.47 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 6 |
| 447 | 27.55 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 15 |
| 463 | 27.57 | humidity | 90 | 14400 | > th | dose dependent | sin | 15 | NA |
| 472 | 27.58 | temperature | 15 | 1440 | > th | dose dependent | sin | 7 | NA |
| 483 | 27.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 596 | 27.66 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 621 | 27.68 | temperature | 30 | 1440 | < th | dose dependent | sin | 7 | NA |
| 660 | 27.70 | temperature | 25 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 661 | 27.70 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 678 | 27.71 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 726 | 27.73 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 19 |
| 786 | 27.77 | temperature | 10 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 798 | 27.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 16 |
| 901 | 27.83 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 10 |
| 911 | 27.83 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 939 | 27.84 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 11 |
| 963 | 27.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 968 | 27.85 | temperature | 20 | 4320 | > th | dose dependent | rect. | 18 | 1 |