BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0456400 Os07g0456400|AK063477
(348 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G51410.1 | chr5:20881821-20883577 REVERSE LENGTH=335 341 3e-94
AT3G03340.1 | chr3:786439-789762 FORWARD LENGTH=403 82 5e-16
AT5G17440.1 | chr5:5749849-5753415 FORWARD LENGTH=405 79 2e-15
>AT5G51410.1 | chr5:20881821-20883577 REVERSE LENGTH=335
Length = 334
Score = 341 bits (875), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 166/229 (72%), Positives = 196/229 (85%), Gaps = 2/229 (0%)
Query: 1 MDAQRALLDELMGTARDLTEEERKAHKEVRWDDPDVCAAFMARFCPHDLFVNTKSNLGPC 60
MDAQRALLDELMG AR+LT+EER+ KEV+WDD +VCA +M RFCPHDLFVNTKS+LG C
Sbjct: 1 MDAQRALLDELMGAARNLTDEERRGFKEVKWDDREVCAFYMVRFCPHDLFVNTKSDLGAC 60
Query: 61 MKIHDLKLKESFESSPRRETHMRRFEAELAQQCEKLVIDLDRKIRRGRERLAQDV-AVPP 119
+IHD KLKESFE+SPR ++++ +FEAELAQ CEKLV DLDRK+RRGRERLAQ+V VPP
Sbjct: 61 SRIHDPKLKESFENSPRHDSYVPKFEAELAQFCEKLVNDLDRKVRRGRERLAQEVEPVPP 120
Query: 120 PVI-GKTSEQLSIIEEKVKKLLEQIEELGEAGKVDEAEALMRKVELLNAEKTALTNQADN 178
P + + +EQLS++EEKVK LLEQ+E LGE GKVDEAEALMRKVE LNAEKT L + +
Sbjct: 121 PSLSAEKAEQLSVLEEKVKNLLEQVEALGEEGKVDEAEALMRKVEGLNAEKTVLLQRPTD 180
Query: 179 KVAMLPQEKKMELCEICGSFLVADDVLERTQSHVTGKQHIGYGLVRDFL 227
KV + QEKKM LCE+CGSFLVA+D +ERTQSHVTGKQH+GYGLVRDF+
Sbjct: 181 KVLAMAQEKKMALCEVCGSFLVANDAVERTQSHVTGKQHVGYGLVRDFI 229
>AT3G03340.1 | chr3:786439-789762 FORWARD LENGTH=403
Length = 402
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 104/190 (54%), Gaps = 22/190 (11%)
Query: 1 MDAQRALLDELMGTAR--DLTEEERKAHKEVRWDDPDVCAAFMARFCPHDLFVNTKSNLG 58
MDA R LD LMG R D+ E RK + D DVC +++ CPHDLF TK ++G
Sbjct: 1 MDAIRKQLDVLMGANRNGDVQEVNRK------YYDRDVCRLYLSGLCPHDLFQLTKMDMG 54
Query: 59 PCMKIHDLKLKESFESSPRRETHMRRFEAELAQQCEKLVIDLDRKIRRGRERLAQD---- 114
PC K+H L+L++ + + R + ++ EL ++L+++ DRKI R +RL ++
Sbjct: 55 PCPKVHSLQLRKEYREA--RAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLQEEDAKA 112
Query: 115 -VAVPPPVIGKTSEQLSIIEEKVKKLLEQIEELGEAGKVDEAEALMRKVELLNAEKTALT 173
+A+ + ++ E L + EK+K+ +++ + GK+D +R +EL+ + T
Sbjct: 113 AIAISVSEVTQSPEILE-LSEKIKEKMKEADIHDLEGKMD---LKIRALELVEEMR---T 165
Query: 174 NQADNKVAML 183
+AD + +L
Sbjct: 166 KRADQQAVLL 175
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 59/113 (52%), Gaps = 11/113 (9%)
Query: 119 PPVIGKTSEQLSIIEEKVKKLLEQIEELGEAGKVDEAEALMRKVELLNAEKTALTNQADN 178
PP +T E +I EK+KK E+LGE G VDEA+ + + E L AD+
Sbjct: 200 PPPDPRTQE---MINEKLKK----AEDLGEQGMVDEAQKALEEAEALKKLTVRREPPADS 252
Query: 179 K----VAMLPQEKKMELCEICGSFLVADDVLERTQSHVTGKQHIGYGLVRDFL 227
V + ++K+ LC+ICG+FL D R H GK H+GY LVRD L
Sbjct: 253 TKYTAVDVRITDQKLRLCDICGAFLSVYDSDRRLADHFGGKLHLGYMLVRDKL 305
>AT5G17440.1 | chr5:5749849-5753415 FORWARD LENGTH=405
Length = 404
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 11/148 (7%)
Query: 1 MDAQRALLDELMGTAR--DLTEEERKAHKEVRWDDPDVCAAFMARFCPHDLFVNTKSNLG 58
MDA R LD LMG R D+TE RK + D DVC +++ CPH+LF TK ++G
Sbjct: 1 MDAMRKQLDVLMGANRNGDVTEVNRK------YYDRDVCRLYLSGLCPHELFQLTKMDMG 54
Query: 59 PCMKIHDLKLKESFESSPRRETHMRRFEAELAQQCEKLVIDLDRKIRRGRERLAQDVAVP 118
PC K+H L+L++ ++ + + + ++ EL ++L+++ DRKI R RL ++ A
Sbjct: 55 PCPKVHSLQLRKEYKDA--KAKGVDNYDRELEDAIDRLIVECDRKIGRALNRLQEEDAKA 112
Query: 119 PPVIGKTS-EQLSIIEEKVKKLLEQIEE 145
I T Q I E K++ E+++E
Sbjct: 113 AIAISVTEFTQSPEILELSKQIKEKMKE 140
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 62/119 (52%), Gaps = 11/119 (9%)
Query: 113 QDVAVPPPVIGKTSEQLSIIEEKVKKLLEQIEELGEAGKVDEAEALMRKVELL---NAEK 169
Q A PP +T E +I EK+KK EELGE G VDEA+ + + E L A +
Sbjct: 194 QPAATLPPPDPRTQE---MINEKLKK----AEELGEQGMVDEAQKALEEAEALKKLTARQ 246
Query: 170 TALTNQADNKVA-MLPQEKKMELCEICGSFLVADDVLERTQSHVTGKQHIGYGLVRDFL 227
+ + A + ++K+ LC+ICG+FL D R H GK H+GY L+RD L
Sbjct: 247 EPVVDSTKYTAADVRITDQKLRLCDICGAFLSVYDSDRRLADHFGGKLHLGYMLIRDKL 305
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.133 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,964,816
Number of extensions: 215022
Number of successful extensions: 1042
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1036
Number of HSP's successfully gapped: 5
Length of query: 348
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 249
Effective length of database: 8,392,385
Effective search space: 2089703865
Effective search space used: 2089703865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)