BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0452500 Os07g0452500|AK061880
(164 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0452500 ORMDL family protein 309 7e-85
Os04g0567700 ORMDL family protein 238 2e-63
Os02g0673600 ORMDL family protein 226 6e-60
>Os07g0452500 ORMDL family protein
Length = 164
Score = 309 bits (791), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 150/164 (91%), Positives = 150/164 (91%)
Query: 1 MGRRAGSYPYYVEAAPPVDVNKNTEWFMYPGVWTTYIXXXXXXXXXXXXXXACSPGIAWT 60
MGRRAGSYPYYVEAAPPVDVNKNTEWFMYPGVWTTYI ACSPGIAWT
Sbjct: 1 MGRRAGSYPYYVEAAPPVDVNKNTEWFMYPGVWTTYILLLFFAWLLVLSVSACSPGIAWT 60
Query: 61 VVNLAHFAITYHFFHWKKGTPFAADDQGIYNRLTWWEQIDNGQQLTRNRKFLTVVPVVLY 120
VVNLAHFAITYHFFHWKKGTPFAADDQGIYNRLTWWEQIDNGQQLTRNRKFLTVVPVVLY
Sbjct: 61 VVNLAHFAITYHFFHWKKGTPFAADDQGIYNRLTWWEQIDNGQQLTRNRKFLTVVPVVLY 120
Query: 121 LIASHLTDYKQPMLFLNTIAVLVLVVAKLPNMHKVRIFGINADI 164
LIASHLTDYKQPMLFLNTIAVLVLVVAKLPNMHKVRIFGINADI
Sbjct: 121 LIASHLTDYKQPMLFLNTIAVLVLVVAKLPNMHKVRIFGINADI 164
>Os04g0567700 ORMDL family protein
Length = 157
Score = 238 bits (606), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 118/152 (77%), Positives = 129/152 (84%), Gaps = 1/152 (0%)
Query: 11 YVEAAPPVDVNKNTEWFMYPGVWTTYIXXXXXXXXXXXXXXACSPGIAWTVVNLAHFAIT 70
YV+A P D+NKNTEWFMYPGVWTTYI C+PG+AWT VNLAHFA+T
Sbjct: 5 YVQAVQPADLNKNTEWFMYPGVWTTYILILFFSWLLVLSVFGCTPGMAWTFVNLAHFAMT 64
Query: 71 YHFFHWKKGTPFAADDQGIYNRLTWWEQIDNGQQLTRNRKFLTVVPVVLYLIASHLTDYK 130
YHFFHWKKGTPFA DDQG+YNRLTWWEQ+DNG+QLTRNRKFLTVVP+VLYLIA H TDY+
Sbjct: 65 YHFFHWKKGTPFA-DDQGMYNRLTWWEQMDNGKQLTRNRKFLTVVPLVLYLIALHTTDYQ 123
Query: 131 QPMLFLNTIAVLVLVVAKLPNMHKVRIFGINA 162
PMLFLNTIAV+VLVVAKLPNMHKVRIFGINA
Sbjct: 124 HPMLFLNTIAVVVLVVAKLPNMHKVRIFGINA 155
>Os02g0673600 ORMDL family protein
Length = 157
Score = 226 bits (576), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 118/152 (77%), Positives = 128/152 (84%), Gaps = 1/152 (0%)
Query: 11 YVEAAPPVDVNKNTEWFMYPGVWTTYIXXXXXXXXXXXXXXACSPGIAWTVVNLAHFAIT 70
YV+A PP D+N+NTEWFMYPGVWTTYI C+PG+AWTVVNL HFAIT
Sbjct: 5 YVQAVPPPDLNRNTEWFMYPGVWTTYICILFFSWLLVLSVFGCTPGMAWTVVNLFHFAIT 64
Query: 71 YHFFHWKKGTPFAADDQGIYNRLTWWEQIDNGQQLTRNRKFLTVVPVVLYLIASHLTDYK 130
YHFFHWKKGTPFA DDQG+YN LTWWEQ+DNG+QLTRNRKFL VVPVVLYLIASH TDY+
Sbjct: 65 YHFFHWKKGTPFA-DDQGMYNTLTWWEQMDNGKQLTRNRKFLVVVPVVLYLIASHTTDYQ 123
Query: 131 QPMLFLNTIAVLVLVVAKLPNMHKVRIFGINA 162
PMLFLNT+AV VLVVAKLPNMHKVRIFGINA
Sbjct: 124 HPMLFLNTLAVAVLVVAKLPNMHKVRIFGINA 155
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.139 0.465
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,297,429
Number of extensions: 177513
Number of successful extensions: 373
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 3
Length of query: 164
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 71
Effective length of database: 12,179,899
Effective search space: 864772829
Effective search space used: 864772829
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 152 (63.2 bits)