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Os02g0673600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : ORMDL family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0167) R2 : 0.0288
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.129 (0.0351) R2dN8 : 0.0371 R2N8 : 0.0288
σ : 0.314
deviance : 45.35
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
27.15 0.245 12.2 0.261 0.504 0.35 -0.188 -0.784 0.249 0.251 20.01 1372 -- --
28.14 0.247 12.2 0.183 0.555 0.36 -0.0942 -- 0.215 24 50 1238 -- --
27.3 0.243 12.2 0.26 0.505 0.347 -- -0.728 0.249 0.244 20 1372 -- --
28.18 0.247 12.2 0.182 0.556 0.362 -- -- 0.214 0.00182 50 1238 -- --
30.96 0.259 12.2 0.179 -- 0.434 -- -0.163 0.186 -- 20.28 173 -- --
31.7 0.264 12.2 0.124 0.454 -- -0.145 -- 0.137 0.313 -- -- -- --
31.79 0.264 12.2 0.13 0.455 -- -- -- 0.138 0.314 -- -- -- --
31.14 0.26 12.2 0.157 -- 0.434 -- -- 0.163 -- 20 189 -- --
29.04 0.251 12.2 -- 0.552 0.331 -- -- 0.192 0.0553 190 1238 -- --
44.79 0.313 12.2 0.145 -- -- -- -- 0.145 -- -- -- -- --
32.24 0.266 12.2 -- 0.456 -- -- -- 0.124 0.329 -- -- -- --
31.77 0.263 12.2 -- -- 0.433 -- -- 0.144 -- 20 187 -- --
45.35 0.314 12.2 -- -- -- -- -- 0.129 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.87 radiation 20 1440 < th dose dependent rect. 11 1
5 26.32 radiation 20 1440 < th dose independent rect. 11 3
21 26.83 radiation 10 1440 < th dose dependent rect. 8 10
24 26.85 radiation 10 1440 > th dose independent rect. 10 3
36 26.87 radiation 1 1440 > th dose independent rect. 11 1
37 26.87 radiation 20 1440 < th dose dependent rect. 8 7
50 26.88 radiation 20 1440 < th dose independent rect. 11 21
52 26.90 radiation 10 1440 < th dose independent rect. 13 1
54 26.90 radiation 20 1440 < th dose dependent rect. 10 8
58 26.92 radiation 20 1440 < th dose dependent sin 21 NA
87 26.95 radiation 20 1440 < th dose independent rect. 7 7
102 26.96 radiation 10 1440 < th dose independent rect. 13 4
114 26.97 radiation 1 1440 > th dose dependent rect. 11 3
121 26.98 radiation 1 1440 < th dose independent rect. 11 1
123 26.98 radiation 1 1440 < th dose dependent rect. 11 1
152 27.04 radiation 20 1440 < th dose independent rect. 7 9
172 27.06 radiation 20 1440 < th dose independent rect. 2 12
174 27.06 radiation 20 1440 < th dose independent rect. 22 16
179 27.07 radiation 20 1440 < th dose independent sin 23 NA
304 27.15 radiation 10 1440 > th dose independent rect. 16 22
356 27.18 radiation 20 1440 < th dose independent no NA NA
380 27.18 radiation 20 1440 < th dose independent rect. 2 21
432 27.19 radiation 10 1440 > th dose independent rect. 8 6
530 27.23 radiation 1 1440 > th dose independent rect. 13 1
558 27.25 radiation 10 1440 > th dose independent rect. 6 8
637 27.28 radiation 30 1440 < th dose dependent rect. 16 23
696 27.31 humidity 50 720 > th dose independent rect. 19 22
727 27.32 radiation 20 1440 < th dose dependent rect. 22 20
738 27.33 radiation 20 1440 < th dose dependent no NA NA
739 27.33 radiation 1 1440 < th dose dependent rect. 13 1
885 27.36 radiation 1 1440 > th dose dependent rect. 8 10
979 27.38 radiation 1 1440 > th dose dependent rect. 11 7
995 27.39 radiation 1 1440 > th dose dependent sin 21 NA