BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0673600 Os02g0673600|J023038E07
         (157 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G01230.1  | chr1:97620-99046 FORWARD LENGTH=158                238   1e-63
AT5G42000.1  | chr5:16799455-16800681 FORWARD LENGTH=155          223   4e-59

>AT1G01230.1 | chr1:97620-99046 FORWARD LENGTH=158
          Length = 157

 Score =  238 bits (607), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 113/155 (72%), Positives = 122/155 (78%)

Query: 1   MAKLYVQAVPPPDLNRNTEWFMYPGVWTTYICIXXXXXXXXXXXXGCTPGMAWTVVNLFH 60
           MA LYV+AVPPPD+NRNTEWFMYPGVWTTY+ I            GC+PGMAWTVVNL H
Sbjct: 1   MANLYVKAVPPPDMNRNTEWFMYPGVWTTYMLILFFGWLVVLSVSGCSPGMAWTVVNLAH 60

Query: 61  FAITYHFFHWKKGTPFADDQGMYNTLTWWEQMDNGKQLTRNRKFLVVVPVVLYLIASHTT 120
           F +TYH FHW KGTPFADDQG+YN LTWWEQMDNG+QLTRNRKFL +VPVVLYLIASHTT
Sbjct: 61  FVVTYHSFHWMKGTPFADDQGIYNGLTWWEQMDNGQQLTRNRKFLTLVPVVLYLIASHTT 120

Query: 121 DYQHPMLFLNTXXXXXXXXXXXPNMHKVRIFGINA 155
           DY+HP LFLNT           PNMHKVRIFGIN 
Sbjct: 121 DYRHPWLFLNTLAVMVLVVAKFPNMHKVRIFGING 155



>AT5G42000.1 | chr5:16799455-16800681 FORWARD LENGTH=155
          Length = 154

 Score =  223 bits (567), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 105/152 (69%), Positives = 117/152 (76%)

Query: 4   LYVQAVPPPDLNRNTEWFMYPGVWTTYICIXXXXXXXXXXXXGCTPGMAWTVVNLFHFAI 63
           +YV+A+P  D+NRNTEWF YPGVWTTYI I             C+PG+AWT+V+L HF +
Sbjct: 1   MYVRALPTTDVNRNTEWFTYPGVWTTYILILFFSWLLVLSVFHCSPGIAWTIVHLAHFTV 60

Query: 64  TYHFFHWKKGTPFADDQGMYNTLTWWEQMDNGKQLTRNRKFLVVVPVVLYLIASHTTDYQ 123
           TYH FHWKKGTPF DDQG+YN LTWWEQ+DNGKQLTRNRKFL VVPVVLYLIASHTTDYQ
Sbjct: 61  TYHSFHWKKGTPFGDDQGVYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQ 120

Query: 124 HPMLFLNTXXXXXXXXXXXPNMHKVRIFGINA 155
           HPMLFLNT           P+MHKVRIFGIN 
Sbjct: 121 HPMLFLNTLAVFVMVVAKFPHMHKVRIFGING 152



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.140    0.490 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,265,211
Number of extensions: 108208
Number of successful extensions: 200
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 2
Length of query: 157
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 67
Effective length of database: 8,639,129
Effective search space: 578821643
Effective search space used: 578821643
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 107 (45.8 bits)