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Os07g0452500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : ORMDL family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0202) R2 : 0.886
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.44 (0.0586) R2dC : 0.588 R2C : 0.804
β3 : -1.39 (0.0903) R2dE : 0.0775 R2E : 0.297
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.163 (0.0426) R2dN8 : 0.00471 R2N8 : 0.00138
σ : 0.38
deviance : 66.59
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_____
C
peak time of C : 15
E
wheather : radiation
threshold : 0.34
memory length : 177
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 19.3
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
55.93 0.351 11.5 0.181 2.33 -1.43 -1.11 -2.53 0.2 15 0.3402 181 19.5 --
66.06 0.379 11.5 0.243 2.33 -1.36 -0.587 -- 0.211 14.9 0.3484 181 19.6 --
57.56 0.353 11.5 0.0625 2.34 -1.69 -- -2.79 0.167 15.1 0.2509 187 19.1 --
66.5 0.38 11.5 0.18 2.35 -1.26 -- -- 0.178 14.9 0.34 181 19.7 --
92.53 0.448 11.5 0.168 -- -2.75 -- 0.178 0.176 -- 1.3 313 3.87 --
95.19 0.457 11.5 0.265 2.94 -- -0.0947 -- 0.207 15.3 -- -- -- --
95.22 0.457 11.5 0.263 2.94 -- -- -- 0.206 15.3 -- -- -- --
92.11 0.447 11.5 0.198 -- -2.72 -- -- 0.184 -- 1 312 3.81 --
66.59 0.38 11.5 -- 2.44 -1.39 -- -- 0.163 15 0.34 177 19.3 --
585.06 1.13 11.5 0.138 -- -- -- -- 0.129 -- -- -- -- --
97.04 0.461 11.5 -- 2.94 -- -- -- 0.177 15.3 -- -- -- --
93.34 0.45 11.5 -- -- -2.72 -- -- 0.168 -- 1 318 3.86 --
585.57 1.13 11.5 -- -- -- -- -- 0.113 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 56.57 radiation 1.0 270 < th dose dependent rect. 1 19
4 59.33 radiation 1.0 270 < th dose independent rect. 1 19
7 60.18 precipitation 0.1 90 < th dose independent rect. 6 21
8 60.18 precipitation 0.1 90 < th dose dependent rect. 6 21
9 60.41 temperature 30.0 90 < th dose dependent rect. 3 4
13 61.07 wind 5.0 90 < th dose independent rect. 3 3
14 61.31 precipitation 0.1 90 < th dose independent rect. 3 3
15 61.31 precipitation 0.1 90 < th dose dependent rect. 3 3
16 61.65 radiation 1.0 270 < th dose independent rect. 24 21
17 61.68 temperature 25.0 90 < th dose independent rect. 3 4
22 61.84 wind 9.0 90 < th dose dependent rect. 3 3
25 62.01 temperature 10.0 90 > th dose independent rect. 3 3
28 62.01 humidity 50.0 90 > th dose independent rect. 3 3
31 62.01 atmosphere 995.0 90 > th dose independent rect. 3 3
32 62.01 atmosphere 1010.0 90 < th dose independent rect. 3 3
34 62.01 radiation 20.0 90 < th dose independent rect. 3 3
37 62.01 temperature 10.0 90 > th dose independent rect. 6 21
39 62.15 wind 9.0 90 < th dose independent rect. 6 21
46 62.57 radiation 30.0 90 < th dose dependent rect. 3 4
61 63.10 temperature 10.0 90 > th dose dependent rect. 6 21
64 63.15 wind 5.0 270 < th dose independent rect. 1 5
65 63.17 temperature 30.0 270 < th dose dependent rect. 1 4
67 63.19 radiation 1.0 270 < th dose dependent rect. 2 3
104 63.40 humidity 50.0 90 > th dose dependent rect. 3 3
116 63.73 precipitation 0.1 270 < th dose independent rect. 1 5
117 63.73 precipitation 0.1 270 < th dose dependent rect. 1 5
120 63.75 temperature 10.0 270 > th dose dependent rect. 21 4
123 63.81 temperature 10.0 10 > th dose dependent rect. 7 20
135 64.17 temperature 10.0 270 > th dose independent rect. 1 5
137 64.17 temperature 30.0 270 < th dose independent rect. 1 5
138 64.17 humidity 50.0 270 > th dose independent rect. 1 5
141 64.17 atmosphere 995.0 270 > th dose independent rect. 1 5
142 64.17 atmosphere 1015.0 270 < th dose independent rect. 1 5
143 64.17 radiation 20.0 270 < th dose independent rect. 1 5
150 64.19 radiation 1.0 270 < th dose dependent rect. 1 5
153 64.28 radiation 40.0 270 < th dose dependent rect. 1 5
156 64.32 temperature 15.0 270 > th dose independent rect. 1 20
158 64.36 atmosphere 1015.0 90 < th dose independent rect. 6 21
167 64.47 radiation 40.0 270 < th dose dependent rect. 16 14
197 64.62 humidity 50.0 270 > th dose dependent rect. 21 4
199 64.68 radiation 1.0 270 < th dose dependent sin 2 NA
201 64.71 precipitation 0.1 10 < th dose independent rect. 3 4
202 64.71 precipitation 0.1 10 < th dose dependent rect. 3 4
206 64.79 wind 9.0 270 < th dose dependent rect. 1 5
211 64.85 wind 1.0 270 > th dose independent rect. 2 2
213 64.86 wind 5.0 10 < th dose independent rect. 3 4
216 64.91 temperature 10.0 270 > th dose independent rect. 21 4
217 64.91 temperature 30.0 270 < th dose independent rect. 21 4
218 64.91 humidity 50.0 270 > th dose independent rect. 21 4
221 64.91 atmosphere 995.0 270 > th dose independent rect. 21 4
222 64.91 radiation 1.0 270 < th dose independent rect. 21 4
228 64.91 radiation 1.0 270 < th dose dependent rect. 21 4
250 64.95 wind 9.0 270 < th dose independent rect. 21 4
265 65.05 temperature 20.0 270 > th dose independent rect. 20 5
273 65.10 wind 9.0 270 < th dose independent rect. 1 20
275 65.12 temperature 30.0 10 < th dose dependent rect. 4 3
278 65.15 radiation 20.0 270 < th dose independent rect. 16 14
280 65.16 atmosphere 995.0 90 > th dose independent rect. 6 21
282 65.17 atmosphere 995.0 90 > th dose dependent rect. 3 3
304 65.44 precipitation 0.1 270 < th dose independent rect. 21 4
305 65.44 precipitation 0.1 270 < th dose dependent rect. 21 4
318 65.46 atmosphere 1015.0 270 < th dose independent rect. 1 19
371 65.85 temperature 10.0 10 > th dose independent rect. 3 4
373 65.85 temperature 30.0 10 < th dose independent rect. 3 4
374 65.85 humidity 50.0 10 > th dose independent rect. 3 4
377 65.85 atmosphere 995.0 10 > th dose independent rect. 3 4
378 65.85 atmosphere 1015.0 10 < th dose independent rect. 3 4
379 65.85 radiation 20.0 10 < th dose independent rect. 3 4
382 65.85 temperature 10.0 10 > th dose independent rect. 7 20
389 65.94 wind 1.0 270 > th dose independent rect. 1 4
413 66.06 wind 9.0 10 < th dose independent rect. 7 20
446 66.18 precipitation 0.1 270 < th dose independent rect. 5 11
452 66.18 precipitation 0.1 270 < th dose dependent rect. 5 11
459 66.23 wind 9.0 270 < th dose independent rect. 16 13
488 66.35 temperature 10.0 270 > th dose independent rect. 5 11
489 66.35 atmosphere 1015.0 270 < th dose independent rect. 5 11
490 66.35 temperature 10.0 270 > th dose independent rect. 16 13
491 66.35 radiation 40.0 270 < th dose independent rect. 16 13
504 66.41 temperature 10.0 90 > th dose dependent rect. 3 3
516 66.49 radiation 10.0 14400 < th dose dependent rect. 24 3
521 66.52 atmosphere 995.0 270 > th dose independent rect. 1 19
550 66.56 temperature 15.0 90 > th dose independent rect. 3 18
564 66.63 atmosphere 1015.0 270 < th dose independent rect. 21 4
592 66.71 atmosphere 1015.0 90 < th dose independent rect. 3 18
601 66.78 humidity 50.0 10 > th dose dependent rect. 3 4
603 66.80 wind 9.0 270 < th dose independent rect. 5 11
615 66.88 radiation 40.0 270 < th dose independent rect. 20 14
628 66.98 radiation 40.0 10 < th dose dependent rect. 4 3
630 66.99 precipitation 0.1 270 < th dose independent rect. 1 20
631 66.99 precipitation 0.1 270 < th dose dependent rect. 1 20
662 67.05 atmosphere 1015.0 90 < th dose dependent rect. 3 3
680 67.07 wind 9.0 90 < th dose independent rect. 3 18
750 67.28 wind 9.0 90 < th dose dependent rect. 6 21
779 67.32 temperature 15.0 270 > th dose independent rect. 9 11
783 67.34 atmosphere 1015.0 10 < th dose independent rect. 7 20
871 67.70 atmosphere 995.0 270 > th dose independent rect. 16 14
883 67.77 temperature 10.0 10 > th dose dependent rect. 23 4
898 67.87 atmosphere 1015.0 10 < th dose dependent rect. 4 3
918 67.94 wind 9.0 1440 < th dose independent rect. 4 4
919 67.94 temperature 10.0 1440 > th dose independent rect. 4 4
922 67.94 temperature 30.0 1440 < th dose independent rect. 4 4
926 67.94 humidity 50.0 1440 > th dose independent rect. 4 4
931 67.94 atmosphere 995.0 1440 > th dose independent rect. 4 4
932 67.94 atmosphere 1015.0 1440 < th dose independent rect. 4 4
933 67.94 temperature 10.0 1440 > th dose independent rect. 8 20
959 67.97 atmosphere 1015.0 270 < th dose independent rect. 9 11
961 67.97 temperature 10.0 270 > th dose independent rect. 20 13
962 67.97 humidity 50.0 270 > th dose independent rect. 20 13
963 67.97 atmosphere 995.0 270 > th dose independent rect. 20 13