BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0291200 Os07g0291200|AK064969
         (140 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0291200  Conserved hypothetical protein                      235   9e-63
Os03g0848400  B-cell receptor-associated 31-like family protein   146   5e-36
Os05g0272900  B-cell receptor-associated 31-like family protein    66   6e-12

>Os07g0291200 Conserved hypothetical protein
          Length = 140

 Score =  235 bits (599), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 119/140 (85%), Positives = 119/140 (85%)

Query: 1   MIQLLFLVLFAEGAAALLLMVKIGPLRELAMRGVEQAKDGKGPAAVKTLACTLLVIFMSS 60
           MIQLLFLVLFAEGAAALLLMVKIGPLRELAMRGVEQAKDGKGPAAVKTLACTLLVIFMSS
Sbjct: 1   MIQLLFLVLFAEGAAALLLMVKIGPLRELAMRGVEQAKDGKGPAAVKTLACTLLVIFMSS 60

Query: 61  VASILRIQNRGIKLGTVSPMDQVLWRTHLLEAXXXXXXXXXXXXXXXXXXXXXWWNLYNC 120
           VASILRIQNRGIKLGTVSPMDQVLWRTHLLEA                     WWNLYNC
Sbjct: 61  VASILRIQNRGIKLGTVSPMDQVLWRTHLLEASLIGIPLSSSSLTIFIFFTSTWWNLYNC 120

Query: 121 TVGGGNDWGLGVDLVDFFGN 140
           TVGGGNDWGLGVDLVDFFGN
Sbjct: 121 TVGGGNDWGLGVDLVDFFGN 140



>Os03g0848400 B-cell receptor-associated 31-like family protein
          Length = 217

 Score =  146 bits (368), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 80/92 (86%), Positives = 85/92 (92%)

Query: 1  MIQLLFLVLFAEGAAALLLMVKIGPLRELAMRGVEQAKDGKGPAAVKTLACTLLVIFMSS 60
          MIQLLFLV+ AE A ALLLMVK+GPLRE+AMRGVEQAK GKGPA VKTLACTL VI MSS
Sbjct: 1  MIQLLFLVVLAEAAVALLLMVKVGPLREVAMRGVEQAKTGKGPATVKTLACTLSVILMSS 60

Query: 61 VASILRIQNRGIKLGTVSPMDQVLWRTHLLEA 92
          VASIL+IQNRG+KLGTVSPMDQVLWRTHLLEA
Sbjct: 61 VASILKIQNRGLKLGTVSPMDQVLWRTHLLEA 92



>Os05g0272900 B-cell receptor-associated 31-like family protein
          Length = 221

 Score = 66.2 bits (160), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 46/68 (67%)

Query: 25 PLRELAMRGVEQAKDGKGPAAVKTLACTLLVIFMSSVASILRIQNRGIKLGTVSPMDQVL 84
          P R LA+  +++AK G+GP  VKT+A T+LV+  SS  SI +I+ R   LG ++P DQVL
Sbjct: 24 PFRRLALLAIDRAKRGRGPVMVKTVAATMLVVLGSSGYSIAKIRRRVGDLGQLTPTDQVL 83

Query: 85 WRTHLLEA 92
             HLLEA
Sbjct: 84 ASRHLLEA 91



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.142    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,875,309
Number of extensions: 111266
Number of successful extensions: 351
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 4
Length of query: 140
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 49
Effective length of database: 12,284,327
Effective search space: 601932023
Effective search space used: 601932023
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 150 (62.4 bits)