BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0212200 Os07g0212200|AK071575
         (392 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0212200  Similar to MRNA-binding protein (Fragment)          642   0.0  
Os12g0420200  NAD-dependent epimerase/dehydratase family pro...   183   2e-46
Os02g0316800  Similar to MRNA binding protein precursor           159   2e-39

>Os07g0212200 Similar to MRNA-binding protein (Fragment)
          Length = 392

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/378 (85%), Positives = 325/378 (85%)

Query: 15  VSGHRRRGGACHLLSSSFLIAFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKSVL 74
           VSGHRRRGGACHLLSSSFLIAFP                                KKSVL
Sbjct: 15  VSGHRRRGGACHLLSSSFLIAFPRAVAARRCGEAAAAPRRVGAVTVRAQAAAGAGKKSVL 74

Query: 75  IVNTNGGGHAVIGFYLAKDLLAAGHAVTVLTVGDEGSDKMKKPPFSRFSELTSAGATTXX 134
           IVNTNGGGHAVIGFYLAKDLLAAGHAVTVLTVGDEGSDKMKKPPFSRFSELTSAGATT  
Sbjct: 75  IVNTNGGGHAVIGFYLAKDLLAAGHAVTVLTVGDEGSDKMKKPPFSRFSELTSAGATTVW 134

Query: 135 XXXXXXXXXXXXXXXXXXXLDNNGKDLDAVKPVVDWAKAAGVAQFLFVSSAGIYTPSDEP 194
                              LDNNGKDLDAVKPVVDWAKAAGVAQFLFVSSAGIYTPSDEP
Sbjct: 135 GDPADVGAAVGGGASFDVVLDNNGKDLDAVKPVVDWAKAAGVAQFLFVSSAGIYTPSDEP 194

Query: 195 PHVEGDAVKESAGHVGVEKYIAEQFGSWASFRPQYMIGSGNNKDCEEWFFDRIVRGRPVP 254
           PHVEGDAVKESAGHVGVEKYIAEQFGSWASFRPQYMIGSGNNKDCEEWFFDRIVRGRPVP
Sbjct: 195 PHVEGDAVKESAGHVGVEKYIAEQFGSWASFRPQYMIGSGNNKDCEEWFFDRIVRGRPVP 254

Query: 255 IPGSGMQVTNISHVRDLASMVALAVESPGAAAGRIFNCVSDRAVTFNGLVKMCAAAAGAQ 314
           IPGSGMQVTNISHVRDLASMVALAVESPGAAAGRIFNCVSDRAVTFNGLVKMCAAAAGAQ
Sbjct: 255 IPGSGMQVTNISHVRDLASMVALAVESPGAAAGRIFNCVSDRAVTFNGLVKMCAAAAGAQ 314

Query: 315 PEILHYDPAAVGVDAKKAFPFRNMHFYAEPRAAKEVLGWRSSTNLPEDLKERFAEYASSG 374
           PEILHYDPAAVGVDAKKAFPFRNMHFYAEPRAAKEVLGWRSSTNLPEDLKERFAEYASSG
Sbjct: 315 PEILHYDPAAVGVDAKKAFPFRNMHFYAEPRAAKEVLGWRSSTNLPEDLKERFAEYASSG 374

Query: 375 RGQKEMSFDLDDKIIAAA 392
           RGQKEMSFDLDDKIIAAA
Sbjct: 375 RGQKEMSFDLDDKIIAAA 392



>Os12g0420200 NAD-dependent epimerase/dehydratase family protein
          Length = 376

 Score =  183 bits (464), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/325 (33%), Positives = 168/325 (51%), Gaps = 13/325 (4%)

Query: 71  KSVLIVNTNGGGHAVIGFYLAKDLLAAGHAVTVLTVGDEG-SDKMKKPPFSRFSELTSAG 129
           K++L++    GG   IG +L++ L+  GH VT+ T G    + ++     + ++E +S  
Sbjct: 52  KNILVM----GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPITQQLPGESDAEYAEFSSKV 107

Query: 130 ATTXXXXXXXXXXXXXXXXXXXXXL-DNNGKDLDAVKPVVDWAKAAGVAQFLFVSSAGIY 188
                                   + D NG++   V P++D      + Q+++ SSAG+Y
Sbjct: 108 LHLKGDRQDFDFVKTSLAAKGFDVVYDINGREAVEVAPILD--ALPNLEQYIYCSSAGVY 165

Query: 189 TPSDEPPHVEGDAVKESAGHVG---VEKYIAEQFGSWASFRPQYMIGSGNNKDCEEWFFD 245
             SD  PH E DAV   + H G    E  +  +  +W S RP Y+ G  N    EEWFF 
Sbjct: 166 LKSDLLPHFETDAVDPKSRHKGKLETESLLETRDVNWTSIRPVYIYGPLNYNPVEEWFFH 225

Query: 246 RIVRGRPVPIPGSGMQVTNISHVRDLASMVALAVESPGAAAGRIFNCVSDRAVTFNGLVK 305
           R+  GRP+P+PG+G Q+T + HV+DLA+   LA+ +P  A+ ++FN    + VTF+GL +
Sbjct: 226 RLKAGRPIPVPGAGNQITQLGHVKDLATAFVLALGNP-KASKQVFNISGAKYVTFDGLAR 284

Query: 306 MCAAAAG-AQPEILHYDPAAVGVDAKKAFPFRNMHFYAEPRAAKEVLGWRSSTNLPEDLK 364
            CA A G  +PEI+HY+P       KKAFPFR+ HF+A    A   LGW+   +L E L 
Sbjct: 285 ACAKAGGFPEPEIVHYNPKDFDFGKKKAFPFRDQHFFASIEKATLELGWKPEYDLVEGLT 344

Query: 365 ERFAEYASSGRGQKEMSFDLDDKII 389
           + +      G  +K   F  DD I+
Sbjct: 345 DSYNLDFGRGTFRKAADFTTDDMIL 369



>Os02g0316800 Similar to MRNA binding protein precursor
          Length = 143

 Score =  159 bits (403), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 75/88 (85%), Positives = 79/88 (89%), Gaps = 2/88 (2%)

Query: 165 KPVVDWAKAAGVAQFLFVSSAGIYTPSDEPPHVEGDAVKESAGHVGVEKYIAEQFGSWAS 224
           +PVVDWAKAAGV QF  VSSAGIYTPSDEPPH+EGDAVKE+AGHV VEKYIAEQFGSWAS
Sbjct: 9   RPVVDWAKAAGVGQF--VSSAGIYTPSDEPPHIEGDAVKENAGHVSVEKYIAEQFGSWAS 66

Query: 225 FRPQYMIGSGNNKDCEEWFFDRIVRGRP 252
           FRPQYMIGSGNNKDCEEWFFD  +   P
Sbjct: 67  FRPQYMIGSGNNKDCEEWFFDSKITQIP 94



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,471,897
Number of extensions: 503849
Number of successful extensions: 1096
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1090
Number of HSP's successfully gapped: 3
Length of query: 392
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 289
Effective length of database: 11,657,759
Effective search space: 3369092351
Effective search space used: 3369092351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)