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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0316800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to MRNA binding protein precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0197) R2 : 0.0517
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.206 (0.0414) R2dN8 : 0.0668 R2N8 : 0.0517
σ : 0.37
deviance : 62.91
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
54.35 0.346 2.93 -0.133 0.174 0.478 0.219 -1.56 0.169 20.7 26.2 699 -- --
54.89 0.345 2.9 0.0737 0.156 0.39 0.0947 -- 0.208 20.9 25.9 699 -- --
54.45 0.344 2.92 -0.115 0.175 0.497 -- -1.56 0.19 20.8 27 697 -- --
54.8 0.345 2.9 0.0768 0.192 0.335 -- -- 0.216 20.6 26.2 695 -- --
55.72 0.348 2.92 -0.166 -- 0.608 -- -1.54 0.16 -- 26 689 -- --
56.87 0.354 2.91 0.148 0.314 -- 0.215 -- 0.226 20.1 -- -- -- --
57.01 0.354 2.91 0.142 0.314 -- -- -- 0.226 20.1 -- -- -- --
56.29 0.349 2.9 0.0484 -- 0.467 -- -- 0.2 -- 25.6 685 -- --
54.95 0.345 2.91 -- 0.186 0.35 -- -- 0.208 20.6 26.03 699 -- --
62.4 0.369 2.9 0.139 -- -- -- -- 0.222 -- -- -- -- --
57.54 0.355 2.91 -- 0.313 -- -- -- 0.21 20.1 -- -- -- --
56.35 0.35 2.9 -- -- 0.475 -- -- 0.194 -- 25.6 687 -- --
62.91 0.37 2.9 -- -- -- -- -- 0.206 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 44.76 temperature 25.0 30 > th dose dependent rect. 20 2
4 45.12 temperature 25.0 30 > th dose independent rect. 20 2
5 45.30 radiation 1.0 1440 < th dose dependent rect. 21 1
9 45.45 wind 3.0 10 > th dose independent rect. 20 1
11 45.51 humidity 90.0 30 < th dose dependent rect. 20 1
17 45.56 atmosphere 1005.0 30 > th dose independent rect. 20 1
32 45.57 temperature 10.0 1440 > th dose independent rect. 21 1
35 45.57 temperature 30.0 1440 < th dose independent rect. 21 1
39 45.57 humidity 50.0 1440 > th dose independent rect. 21 1
45 45.57 humidity 90.0 30 < th dose independent rect. 20 1
46 45.57 atmosphere 995.0 1440 > th dose independent rect. 21 1
47 45.57 radiation 1.0 1440 < th dose independent rect. 21 1
67 45.57 temperature 10.0 1440 > th dose independent rect. 22 23
70 45.57 wind 1.0 30 > th dose dependent rect. 20 1
71 45.57 atmosphere 1005.0 10 > th dose dependent rect. 20 1
74 45.58 wind 7.0 30 < th dose independent rect. 20 1
76 45.58 precipitation 0.1 30 < th dose independent rect. 21 23
79 45.58 precipitation 0.1 30 < th dose dependent rect. 21 23
85 45.61 temperature 10.0 30 > th dose independent rect. 20 1
87 45.61 temperature 30.0 30 < th dose independent rect. 20 1
88 45.61 humidity 50.0 30 > th dose independent rect. 20 1
91 45.61 atmosphere 995.0 30 > th dose independent rect. 20 1
92 45.61 atmosphere 1010.0 30 < th dose independent rect. 20 1
94 45.61 radiation 1.0 30 < th dose independent rect. 20 1
99 45.61 precipitation 0.1 30 < th dose independent rect. 20 1
100 45.61 temperature 10.0 30 > th dose independent rect. 21 23
103 45.61 radiation 1.0 30 < th dose dependent rect. 20 1
108 45.61 precipitation 0.1 30 < th dose dependent rect. 20 1
110 45.62 atmosphere 1015.0 30 < th dose dependent rect. 20 1
113 45.64 wind 9.0 30 < th dose dependent rect. 20 1
114 45.64 humidity 50.0 30 > th dose dependent rect. 20 1
127 45.76 temperature 30.0 30 < th dose dependent rect. 20 1
163 45.92 atmosphere 995.0 30 > th dose independent rect. 21 23
177 46.60 wind 9.0 30 < th dose independent rect. 21 23
189 47.68 temperature 25.0 30 > th dose dependent rect. 20 5
209 48.08 precipitation 0.1 1440 < th dose independent rect. 21 1
210 48.08 precipitation 0.1 1440 < th dose dependent rect. 21 1
214 48.28 humidity 50.0 30 > th dose independent rect. 21 23
224 48.56 atmosphere 1015.0 30 < th dose independent rect. 21 23
265 49.42 temperature 30.0 30 < th dose independent rect. 21 23
273 49.75 wind 9.0 1440 < th dose independent rect. 21 1
324 51.36 temperature 25.0 270 > th dose dependent rect. 17 4
325 51.37 humidity 50.0 30 > th dose dependent rect. 21 23
338 51.62 temperature 25.0 270 > th dose independent rect. 17 4
339 51.62 temperature 25.0 270 > th dose dependent rect. 17 16
367 51.73 temperature 25.0 30 > th dose independent rect. 20 5
428 52.08 temperature 25.0 90 > th dose dependent sin 11 NA
523 52.69 temperature 25.0 90 > th dose dependent rect. 19 16
532 52.73 radiation 10.0 30 < th dose dependent rect. 21 23
533 52.74 temperature 30.0 30 < th dose independent rect. 12 8
563 52.85 wind 1.0 30 > th dose independent rect. 21 23
574 52.89 humidity 60.0 90 > th dose independent rect. 12 7
610 52.94 humidity 60.0 720 > th dose independent rect. 1 8
618 52.98 wind 3.0 270 > th dose independent rect. 17 4
627 53.03 humidity 90.0 270 < th dose dependent rect. 17 4
633 53.05 radiation 30.0 90 < th dose dependent rect. 21 12
647 53.10 temperature 10.0 90 > th dose dependent rect. 7 14
649 53.11 radiation 1.0 270 > th dose independent rect. 17 12
655 53.13 radiation 1.0 270 > th dose independent rect. 17 1
657 53.13 wind 9.0 720 < th dose independent rect. 1 8
658 53.13 temperature 10.0 720 > th dose independent rect. 1 8
660 53.13 atmosphere 995.0 720 > th dose independent rect. 1 8
661 53.13 temperature 10.0 720 > th dose independent rect. 9 16
664 53.14 humidity 90.0 270 < th dose independent rect. 16 5
666 53.14 radiation 1.0 30 < th dose independent rect. 21 23
701 53.21 temperature 25.0 270 > th dose independent rect. 17 1
742 53.26 precipitation 0.1 90 < th dose independent rect. 7 14
747 53.26 precipitation 0.1 90 < th dose dependent rect. 7 14
749 53.27 radiation 10.0 90 < th dose independent rect. 21 10
750 53.27 wind 9.0 90 < th dose independent rect. 7 14
753 53.28 temperature 10.0 90 > th dose independent rect. 21 10
754 53.28 temperature 30.0 90 < th dose independent rect. 21 10
755 53.28 humidity 50.0 90 > th dose independent rect. 21 10
757 53.28 atmosphere 995.0 90 > th dose independent rect. 21 10
758 53.28 radiation 30.0 90 < th dose independent rect. 21 10
760 53.28 radiation 10.0 90 < th dose independent rect. 21 12
761 53.28 temperature 10.0 90 > th dose independent rect. 7 14
762 53.28 atmosphere 1015.0 90 < th dose independent rect. 7 14
765 53.29 humidity 80.0 270 < th dose independent rect. 17 2
773 53.30 wind 9.0 90 < th dose independent rect. 21 10
777 53.30 humidity 90.0 270 < th dose dependent rect. 16 17
796 53.33 humidity 50.0 720 > th dose independent rect. 17 16
833 53.40 temperature 25.0 90 > th dose independent rect. 19 16
842 53.42 wind 1.0 720 > th dose independent rect. 13 8
901 53.44 temperature 10.0 720 > th dose independent rect. 13 8
902 53.44 temperature 10.0 720 > th dose independent rect. 21 16
903 53.44 atmosphere 995.0 720 > th dose independent rect. 21 16
919 53.46 humidity 90.0 270 < th dose dependent rect. 17 1
924 53.47 temperature 30.0 720 < th dose independent rect. 1 8
925 53.47 precipitation 0.1 90 < th dose independent rect. 21 10
928 53.47 precipitation 0.1 90 < th dose dependent rect. 21 10
931 53.48 atmosphere 995.0 90 > th dose independent rect. 7 14
938 53.50 atmosphere 1015.0 90 < th dose independent rect. 21 10
966 53.54 temperature 10.0 10 > th dose dependent rect. 20 16
969 53.55 humidity 50.0 270 > th dose independent rect. 21 20
982 53.56 humidity 50.0 90 > th dose dependent rect. 21 10
998 53.60 radiation 1.0 270 > th dose independent rect. 16 19