Os07g0212200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MRNA-binding protein (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os07g0212200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to MRNA-binding protein (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.03 | 0.448 | 12.8 | -2.2 | 0.808 | -0.887 | 0.541 | -0.692 | -1.12 | 23.5 | 58.06 | 1594 | -- | -- |
| 91.7 | 0.446 | 12.8 | -2.28 | 0.817 | -0.952 | 0.5 | -- | -1.13 | 23.7 | 56.87 | 1650 | -- | -- |
| 92.25 | 0.447 | 12.8 | -2.24 | 0.807 | -0.891 | -- | -0.58 | -1.12 | 23.5 | 57.03 | 1594 | -- | -- |
| 92.77 | 0.449 | 12.8 | -2.3 | 0.819 | -0.944 | -- | -- | -1.13 | 23.6 | 57 | 1626 | -- | -- |
| 112.74 | 0.495 | 12.8 | -2.17 | -- | -1.37 | -- | -0.605 | -1.21 | -- | 62 | 2341 | -- | -- |
| 112.41 | 0.497 | 12.8 | -2.26 | 0.773 | -- | 0.568 | -- | -1.07 | 23.1 | -- | -- | -- | -- |
| 113.78 | 0.5 | 12.8 | -2.28 | 0.77 | -- | -- | -- | -1.07 | 23.1 | -- | -- | -- | -- |
| 105.75 | 0.479 | 12.8 | -2.23 | -- | -1.33 | -- | -- | -1.13 | -- | 62.62 | 994 | -- | -- |
| 155.27 | 0.58 | 12.8 | -- | 0.744 | -2.75 | -- | -- | -1.05 | 22.9 | 31.88 | 47520 | -- | -- |
| 150.78 | 0.574 | 12.8 | -2.26 | -- | -- | -- | -- | -1.07 | -- | -- | -- | -- | -- |
| 251.09 | 0.741 | 12.8 | -- | 0.751 | -- | -- | -- | -0.819 | 22.9 | -- | -- | -- | -- |
| 189.6 | 0.641 | 12.8 | -- | -- | -2.76 | -- | -- | -1.05 | -- | 32.79 | 47520 | -- | -- |
| 286.07 | 0.789 | 12.7 | -- | -- | -- | -- | -- | -0.815 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.20 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 2 | 83.22 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 3 | 83.22 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 4 | 83.31 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 5 |
| 11 | 84.32 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 38 | 85.38 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 39 | 85.39 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 75 | 86.06 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 77 | 86.08 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 96 | 86.37 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 3 |
| 120 | 86.39 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 20 | 15 |
| 124 | 86.40 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 23 | 12 |
| 133 | 86.43 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 139 | 86.45 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 140 | 86.45 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 4 |
| 184 | 86.68 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 187 | 86.70 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 233 | 86.92 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 235 | 86.93 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 243 | 86.94 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 253 | 86.94 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 260 | 86.95 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 19 | 16 |
| 262 | 86.96 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 18 | 18 |
| 264 | 86.98 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 266 | 86.99 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 5 | NA |
| 310 | 87.03 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 6 | 16 |
| 315 | 87.05 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 334 | 87.08 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 335 | 87.08 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 339 | 87.09 | temperature | 30.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 359 | 87.13 | temperature | 30.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 393 | 87.18 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 401 | 87.19 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 402 | 87.19 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 404 | 87.19 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 484 | 87.26 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 490 | 87.26 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 13 | 22 |
| 532 | 87.32 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 555 | 87.35 | temperature | 25.0 | 14400 | > th | dose dependent | no | NA | NA |
| 571 | 87.37 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 586 | 87.39 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 592 | 87.39 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 597 | 87.40 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 7 | 9 |
| 604 | 87.40 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 636 | 87.42 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 641 | 87.42 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 16 | 14 |
| 653 | 87.44 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 658 | 87.44 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 13 | 9 |
| 704 | 87.48 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 740 | 87.49 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 747 | 87.50 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 754 | 87.50 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 17 | 9 |
| 892 | 87.59 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 21 |
| 896 | 87.59 | humidity | 80.0 | 14400 | < th | dose dependent | sin | 13 | NA |
| 905 | 87.60 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 3 |