BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0205000 Os07g0205000|AK072032
(175 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0205000 Similar to Cytochrome-C reductase 14 kDa subun... 300 3e-82
Os03g0806900 Similar to Cytochrome-C reductase 14 kDa subun... 179 7e-46
Os08g0246400 Similar to Ubiquinol-cytochrome c reductase co... 134 3e-32
>Os07g0205000 Similar to Cytochrome-C reductase 14 kDa subunit (EC 1.10.2.2)
(Fragment)
Length = 175
Score = 300 bits (768), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 153/175 (87%), Positives = 153/175 (87%)
Query: 1 MFHKLRGPTPTTQSQATVRSPLSSNQTQAKHPPHXXXXXXXXSVEASGRFSKMLSSLSAW 60
MFHKLRGPTPTTQSQATVRSPLSSNQTQAKHPPH SVEASGRFSKMLSSLSAW
Sbjct: 1 MFHKLRGPTPTTQSQATVRSPLSSNQTQAKHPPHRRRERERESVEASGRFSKMLSSLSAW 60
Query: 61 LVNPRRNPLARLHMNAVASRLRKYGXXXXXXXXXXXXXXIKEALARLPREVVDARNQRLK 120
LVNPRRNPLARLHMNAVASRLRKYG IKEALARLPREVVDARNQRLK
Sbjct: 61 LVNPRRNPLARLHMNAVASRLRKYGLRYDDLYDPYHDLDIKEALARLPREVVDARNQRLK 120
Query: 121 RAMDLSMKHQYLPADAQAKQTPFRGYLSDMLALVKKESAEREALGALPLYQRTIP 175
RAMDLSMKHQYLPADAQAKQTPFRGYLSDMLALVKKESAEREALGALPLYQRTIP
Sbjct: 121 RAMDLSMKHQYLPADAQAKQTPFRGYLSDMLALVKKESAEREALGALPLYQRTIP 175
>Os03g0806900 Similar to Cytochrome-C reductase 14 kDa subunit (EC 1.10.2.2)
(Fragment)
Length = 126
Score = 179 bits (455), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 89/126 (70%), Positives = 98/126 (77%)
Query: 50 FSKMLSSLSAWLVNPRRNPLARLHMNAVASRLRKYGXXXXXXXXXXXXXXIKEALARLPR 109
S MLS+ S W VNPRRNPLARLHM A++SRLRKYG IKEAL RLPR
Sbjct: 1 MSSMLSAFSQWFVNPRRNPLARLHMQAISSRLRKYGLRYDDLYDPKHDLDIKEALERLPR 60
Query: 110 EVVDARNQRLKRAMDLSMKHQYLPADAQAKQTPFRGYLSDMLALVKKESAEREALGALPL 169
EVVDAR+QRLKRAMDLSMKHQYL + QA+QTPFRGYLSDM+ LVKKE ERE LGALPL
Sbjct: 61 EVVDARHQRLKRAMDLSMKHQYLSENDQAQQTPFRGYLSDMMDLVKKERLEREELGALPL 120
Query: 170 YQRTIP 175
+QRT+P
Sbjct: 121 HQRTLP 126
>Os08g0246400 Similar to Ubiquinol-cytochrome c reductase complex 14 kDa protein
(EC 1.10.2.2) (CR14)
Length = 127
Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/99 (71%), Positives = 71/99 (71%), Gaps = 2/99 (2%)
Query: 53 MLSSLSAWLVNPRRNPLARLHMNAVASRLRKYGXXXXXXXXXXXXX--XIKEALARLPRE 110
MLS LSAWLVN RRNPLARLHMN VAS L KYG IKEALARLPRE
Sbjct: 1 MLSCLSAWLVNLRRNPLARLHMNVVASHLHKYGLRYDDLFDAYQYHGLDIKEALARLPRE 60
Query: 111 VVDARNQRLKRAMDLSMKHQYLPADAQAKQTPFRGYLSD 149
VVDA NQRLKR MDLS KHQYLPAD QA QT RGYLSD
Sbjct: 61 VVDAHNQRLKRTMDLSTKHQYLPADEQAMQTTLRGYLSD 99
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.128 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,690,655
Number of extensions: 138473
Number of successful extensions: 347
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 346
Number of HSP's successfully gapped: 3
Length of query: 175
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 81
Effective length of database: 12,127,685
Effective search space: 982342485
Effective search space used: 982342485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 152 (63.2 bits)