BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0200000 Os07g0200000|AK102401
(788 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0200000 Conserved hypothetical protein 1418 0.0
Os03g0804400 Conserved hypothetical protein 890 0.0
Os07g0568000 Apolipophorin III-like domain containing protein 345 7e-95
>Os07g0200000 Conserved hypothetical protein
Length = 788
Score = 1418 bits (3670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 698/768 (90%), Positives = 698/768 (90%)
Query: 1 MASAKSSRSRPAGHSGVFPVSGAVXXXXXXXXXXXXXXXXXXXXXVQLADKLKIFKTDNF 60
MASAKSSRSRPAGHSGVFPVSGAV VQLADKLKIFKTDNF
Sbjct: 1 MASAKSSRSRPAGHSGVFPVSGAVGGGGGGGGGGGGGGGGGGDGGVQLADKLKIFKTDNF 60
Query: 61 DPDAYVQSKCQTMNEKEIRHLCSYLQDLKKASAEEMRRSVYANYAAFIRTSKEISDLEGE 120
DPDAYVQSKCQTMNEKEIRHLCSYLQDLKKASAEEMRRSVYANYAAFIRTSKEISDLEGE
Sbjct: 61 DPDAYVQSKCQTMNEKEIRHLCSYLQDLKKASAEEMRRSVYANYAAFIRTSKEISDLEGE 120
Query: 121 LLSIRNLLNTQAALIHGLSEGVQIDSLTSNTEGSAEDDISNVEDQEPSEIQKWSADFPDM 180
LLSIRNLLNTQAALIHGLSEGVQIDSLTSNTEGSAEDDISNVEDQEPSEIQKWSADFPDM
Sbjct: 121 LLSIRNLLNTQAALIHGLSEGVQIDSLTSNTEGSAEDDISNVEDQEPSEIQKWSADFPDM 180
Query: 181 LDVLLAERRVXXXXXXXXXXXXXXXXXKLKQTLTATEIAALRRAVSDNRQKLADQLAEAA 240
LDVLLAERRV KLKQTLTATEIAALRRAVSDNRQKLADQLAEAA
Sbjct: 181 LDVLLAERRVDEALDALDEAERLASDAKLKQTLTATEIAALRRAVSDNRQKLADQLAEAA 240
Query: 241 CQSSTRGIELRAAASALKRLGDGPRAHSLLLNAHNQRLQCNMQTIHPSSTSYGGAYTAAL 300
CQSSTRGIELRAAASALKRLGDGPRAHSLLLNAHNQRLQCNMQTIHPSSTSYGGAYTAAL
Sbjct: 241 CQSSTRGIELRAAASALKRLGDGPRAHSLLLNAHNQRLQCNMQTIHPSSTSYGGAYTAAL 300
Query: 301 AQQVFSVVAQALSDSVEVFGDESCYASELVTWATKQVMSFALLVKRHVLSSCXXXXXXXX 360
AQQVFSVVAQALSDSVEVFGDESCYASELVTWATKQVMSFALLVKRHVLSSC
Sbjct: 301 AQQVFSVVAQALSDSVEVFGDESCYASELVTWATKQVMSFALLVKRHVLSSCAAAGGLRA 360
Query: 361 XXECVQISLGHCSLLEARGLSVAAVLLRQFRPSLEQALYSNIRRIEESTAALAAADDWIL 420
ECVQISLGHCSLLEARGLSVAAVLLRQFRPSLEQALYSNIRRIEESTAALAAADDWIL
Sbjct: 361 AAECVQISLGHCSLLEARGLSVAAVLLRQFRPSLEQALYSNIRRIEESTAALAAADDWIL 420
Query: 421 TYPPTGIRPLARSSAANLALQPKLSNSAHRFNSMVQEFFEDVAPLLSLQLGGSTMDDITK 480
TYPPTGIRPLARSSAANLALQPKLSNSAHRFNSMVQEFFEDVAPLLSLQLGGSTMDDITK
Sbjct: 421 TYPPTGIRPLARSSAANLALQPKLSNSAHRFNSMVQEFFEDVAPLLSLQLGGSTMDDITK 480
Query: 481 IFNSYVNLLISALPGSMEDEANIDGLGNKIVRMXXXXXXXXXXXXXXXXXXXXXXPRAAM 540
IFNSYVNLLISALPGSMEDEANIDGLGNKIVRM PRAAM
Sbjct: 481 IFNSYVNLLISALPGSMEDEANIDGLGNKIVRMAESEEQQLALLANASLLAEELLPRAAM 540
Query: 541 KLSSMNHSSMDDLRKRGSDKQNRMPEQREWKRKLQRMVDRLRDSFCRQHALELIFTDEGE 600
KLSSMNHSSMDDLRKRGSDKQNRMPEQREWKRKLQRMVDRLRDSFCRQHALELIFTDEGE
Sbjct: 541 KLSSMNHSSMDDLRKRGSDKQNRMPEQREWKRKLQRMVDRLRDSFCRQHALELIFTDEGE 600
Query: 601 THLSADMYISMDNTVEEPEWAPSLIFQELYAKLNRMASIAADMFVGRERFATLLMMRLTE 660
THLSADMYISMDNTVEEPEWAPSLIFQELYAKLNRMASIAADMFVGRERFATLLMMRLTE
Sbjct: 601 THLSADMYISMDNTVEEPEWAPSLIFQELYAKLNRMASIAADMFVGRERFATLLMMRLTE 660
Query: 661 TVILWLSEDQAFWEEIEQGPKPLGPLGLQQFYLDMQFVIIFGQGRFLSRHVHQVILDIID 720
TVILWLSEDQAFWEEIEQGPKPLGPLGLQQFYLDMQFVIIFGQGRFLSRHVHQVILDIID
Sbjct: 661 TVILWLSEDQAFWEEIEQGPKPLGPLGLQQFYLDMQFVIIFGQGRFLSRHVHQVILDIID 720
Query: 721 RAMAAFSATGMNPDSVLPGDDWFMDVSQEVVSMISGKGRAANGDREIN 768
RAMAAFSATGMNPDSVLPGDDWFMDVSQEVVSMISGKGRAANGDREIN
Sbjct: 721 RAMAAFSATGMNPDSVLPGDDWFMDVSQEVVSMISGKGRAANGDREIN 768
>Os03g0804400 Conserved hypothetical protein
Length = 641
Score = 890 bits (2299), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/627 (69%), Positives = 506/627 (80%), Gaps = 17/627 (2%)
Query: 1 MASAKSSRSRPAGHSGVFPVSGAVXXXXXXXXXXXXXXXXXXXXXVQLADKLKIFKTDNF 60
M+SAKS+RSRPAGHSGV PV+ V LADK+KIFKTDNF
Sbjct: 1 MSSAKSTRSRPAGHSGVLPVNATAGGGDGG---------------VPLADKMKIFKTDNF 45
Query: 61 DPDAYVQSKCQTMNEKEIRHLCSYLQDLKKASAEEMRRSVYANYAAFIRTSKEISDLEGE 120
DPDAYVQSKC MNEKEIRHLCSYLQDLKKAS+EEMRRSVYANYAAFIRTSKEISDLE E
Sbjct: 46 DPDAYVQSKCHAMNEKEIRHLCSYLQDLKKASSEEMRRSVYANYAAFIRTSKEISDLERE 105
Query: 121 LLSIRNLLNTQAALIHGLSEGVQIDSLTSNTEGSAEDDISNVEDQEPSEIQKWSADFPDM 180
LLS+RNLL+TQ+ALI GLSEGV IDSLT+ +EGSAE+ EDQEPSEIQ W DFP+M
Sbjct: 106 LLSVRNLLSTQSALIRGLSEGVHIDSLTTGSEGSAEEGTD--EDQEPSEIQNWCTDFPEM 163
Query: 181 LDVLLAERRVXXXXXXXXXXXXXXXXXKLKQTLTATEIAALRRAVSDNRQKLADQLAEAA 240
LDVLLAERRV K KQTLT +I A++RA+SDNR KLA+QLAEAA
Sbjct: 164 LDVLLAERRVDEALDALDEAERVVADEKQKQTLTTADILAVKRAISDNRLKLANQLAEAA 223
Query: 241 CQSSTRGIELRAAASALKRLGDGPRAHSLLLNAHNQRLQCNMQTIHPSSTSYGGAYTAAL 300
CQSSTRG+ELRA+ASALKRLGDGPRAHSLLL+AHNQRLQC+MQTIHPSSTS+ GAYTA+L
Sbjct: 224 CQSSTRGVELRASASALKRLGDGPRAHSLLLSAHNQRLQCSMQTIHPSSTSHSGAYTASL 283
Query: 301 AQQVFSVVAQALSDSVEVFGDESCYASELVTWATKQVMSFALLVKRHVLSSCXXXXXXXX 360
A+QVFSV+AQALSDS+E+FGDE Y SEL+TWAT+Q M FALLVKRH L++C
Sbjct: 284 ARQVFSVIAQALSDSLELFGDEPSYLSELITWATEQAMLFALLVKRHALAACVAAGGLRA 343
Query: 361 XXECVQISLGHCSLLEARGLSVAAVLLRQFRPSLEQALYSNIRRIEESTAALAAADDWIL 420
EC+QISLGH SLLE RGLS+++VL++QF+PS+EQAL S++RRIEESTAALAAADDW+L
Sbjct: 344 AAECIQISLGHSSLLETRGLSLSSVLMKQFKPSVEQALESSLRRIEESTAALAAADDWVL 403
Query: 421 TYPPTGIRPLARSSAANLALQPKLSNSAHRFNSMVQEFFEDVAPLLSLQLGGSTMDDITK 480
TYPP+GIR ARSSA++L LQPKLSNS HRF+SMVQ+FFEDV PL SLQLGGS MD + K
Sbjct: 404 TYPPSGIRTFARSSASSLLLQPKLSNSGHRFSSMVQDFFEDVGPLHSLQLGGSAMDGLLK 463
Query: 481 IFNSYVNLLISALPGSMEDEANIDGLGNKIVRMXXXXXXXXXXXXXXXXXXXXXXPRAAM 540
IFNSYVNLLISALP S++DEAN++GLGNKIVR+ PRAAM
Sbjct: 464 IFNSYVNLLISALPHSLDDEANLEGLGNKIVRVAETEEQQLALFANASLLAEELLPRAAM 523
Query: 541 KLSSMNHSSMDDLRKRGSDKQNRMPEQREWKRKLQRMVDRLRDSFCRQHALELIFTDEGE 600
KLSS+NH+ ++D+RK+ D+QNR+ EQREWK+KLQR+VD+L+DSFCRQHAL+LIFT++ +
Sbjct: 524 KLSSVNHTGVNDIRKKSVDRQNRVAEQREWKKKLQRIVDKLKDSFCRQHALDLIFTEDDD 583
Query: 601 THLSADMYISMDNTVEEPEWAPSLIFQ 627
T LSA+MYI+MDNTVEEPEW PSLIFQ
Sbjct: 584 TRLSAEMYINMDNTVEEPEWVPSLIFQ 610
>Os07g0568000 Apolipophorin III-like domain containing protein
Length = 773
Score = 345 bits (885), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 226/711 (31%), Positives = 357/711 (50%), Gaps = 47/711 (6%)
Query: 62 PDAYVQSKCQTMNEKEIRHLCSYLQDLKKASAEEMRRSVYANYAAFIRTSKEISDLEGEL 121
P + +++ Q+ EK IR +CS L +LK A E + ++ + Y AF+R S+E+ + E EL
Sbjct: 21 PQSSIRAAYQSQTEKGIRKICSELLELKDA-IENLCGNMQSKYHAFLRISEEVVEAEQEL 79
Query: 122 LSIRNLLNTQAALIHGLSEGV----QIDSLTSNTEGSAEDDISNVEDQEPS-EIQKWSAD 176
+ ++ ++ Q L+ L GV ++ E E D+ D+ S + Q
Sbjct: 80 IELQKHVSAQGILVQDLMSGVCRELEMWQKHCKDEHVEEKDLQTELDEILSYDTQDSKVS 139
Query: 177 FPDMLDVLLAERRVXXXXXXXXXXXXXXXXXKLKQTLTATEIAALRRAVSDNRQKLADQL 236
F D LD LLAE ++ EI+ + A+S + L DQL
Sbjct: 140 FLDKLDTLLAEHKIEEALLALETEEKKCMATDDPGKELDAEISTYKTALSKRKSILEDQL 199
Query: 237 AEAACQSSTRGIELRAAASALKRLGDGPRAHSLLLNAHNQRLQCNMQTIHPSSTSYGGAY 296
+ Q S ELR + S L ++G G AH +LL A+ RLQ N++ P+ + Y Y
Sbjct: 200 VRYSEQPSLSITELRKSLSGLIKIGKGSLAHQVLLKAYGSRLQKNVEAFLPTCSIYTETY 259
Query: 297 TAALAQQVFSVVAQALSDSVEVFGDESCYASELVTWATKQVMSFALLVKRH--------- 347
+A L++ VFS +++ +S +FGD + ++ WA ++ +FA LVK +
Sbjct: 260 SATLSKIVFSAISKVSKESSSLFGDSPMNLNRIIQWAEYEIETFARLVKENSPLPESVSA 319
Query: 348 VLSSCXXXXXXXXXXECVQISLGHCSLLEARGLSVAAVLLRQFRPSLEQALYSNIRRIEE 407
+ S+C C+Q SL HCS LE+ GL + +L+ P +E+ L N RR+
Sbjct: 320 LRSACI----------CIQTSLTHCSYLESYGLKFSNLLMVLLHPYVEEVLELNFRRLRR 369
Query: 408 STAALAAADDWILTYPPTGIRPLARSSAANLALQPKLSNSAHRFNSMVQEFFEDVAPLLS 467
A DD +L P G R L+ S A N+ L++S +F S+V + + + P+
Sbjct: 370 KIVDSAKNDDILLPSPQEGSR-LSSSVAPNIM----LTSSGKKFMSIVNDVLDQITPMTI 424
Query: 468 LQLGGSTMDDITKIFNSYVNLLISALPGSMEDEANIDGLGNKIVRMXXXXXXXXXXXXXX 527
+ GG+ ++ ++F+ YV LI LPG+ ED+ ++ I
Sbjct: 425 VHFGGTILNKFVQLFDKYVEALIEVLPGASEDDHLVES-KEPIEFKAESDAQQIQLIGTA 483
Query: 528 XXXXXXXXPRAAMKLSSMNHSSMDDLRKRGSDKQNRMP-------EQREWKRKLQRMVDR 580
P A K + +KR + E +EWKR LQ +D+
Sbjct: 484 YTVADELLPAAVSKFFDIQTE-----KKRIGGTGEGLGSGSIYSIEYKEWKRSLQHSLDK 538
Query: 581 LRDSFCRQHALELIFTDEGETHLSADMYISM--DNTVEEPEWAPSLIFQELYAKLNRMAS 638
LRD FC Q+ L I+ EG++ L A MY+ + D+ + E + +PSL FQ L+ KL ++AS
Sbjct: 539 LRDHFCLQYVLSFIYL-EGKSRLDARMYLELKTDDLLWECDPSPSLPFQALFVKLRQLAS 597
Query: 639 IAADMFVGRERFATLLMMRLTETVILWLSEDQAFWEEIEQGPKPLGPLGLQQFYLDMQFV 698
+A D+ +G+E+ +L+ RLTETV++WLS +Q FW+ E L P GLQQ LDM FV
Sbjct: 598 VAGDVLLGKEKIQKVLLSRLTETVVMWLSNEQEFWDVFEDQSIQLRPSGLQQLILDMHFV 657
Query: 699 I-IFGQGRFLSRHVHQVILDIIDRAMAAFSATGMNPDSVLPGDDWFMDVSQ 748
+ I GR+ R V Q++ II RA+AAFS ++P S LP D+WF+D+++
Sbjct: 658 VEIAVCGRYPHRPVQQLVSVIITRAIAAFSVRNVDPQSSLPEDEWFLDMAK 708
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.130 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,594,076
Number of extensions: 795704
Number of successful extensions: 2221
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2209
Number of HSP's successfully gapped: 4
Length of query: 788
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 679
Effective length of database: 11,344,475
Effective search space: 7702898525
Effective search space used: 7702898525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)